RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 PRNPP04156 253 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 PRKCGP05129 697 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 IGHV4-34P06331 123 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 ITGAVP06756 1048 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 ZSCAN5DPP0CG00 497 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 TCP1P17987 556 aaKnown RBP7.04□□□□□ -1.28
LIMD1-204ENST00000474665 NFKB1P19838 968 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 CD6P30203 668 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 CD86P42081 329 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 RECQLP46063 649 aaPredicted RBP7.04□□□□□ -1.28
LIMD1-204ENST00000474665 ADPRHP54922 357 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 PPP2CBP62714 309 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 PPP2CAP67775 309 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 SEMG2Q02383 582 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 OLIG2Q13516 323 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 PLK5Q496M5 336 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 USP39Q53GS9 565 aaKnown RBP7.04□□□□□ -1.28
LIMD1-204ENST00000474665 RALGPS1Q5JS13 557 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 ANKRD20A2Q5SQ80 823 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 ANKRD20A1Q5TYW2 823 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 ANKRD20A3Q5VUR7 823 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP7.04□□□□□ -1.28
LIMD1-204ENST00000474665 USP30Q70CQ3 517 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 ERN2Q76MJ5 926 aaKnown RBP7.04□□□□□ -1.28
LIMD1-204ENST00000474665 RAB44Q7Z6P3 723 aaPredicted RBP7.04□□□□□ -1.28
LIMD1-204ENST00000474665 DSG4Q86SJ6 1040 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 ZSCAN30Q86W11 494 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 SLC41A1Q8IVJ1 513 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 CDKL3Q8IVW4 592 aaPredicted RBP7.04□□□□□ -1.28
LIMD1-204ENST00000474665 PGBD3Q8N328 593 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 DEFB119Q8N690 84 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 C1orf216Q8TAB5 229 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 ZC3H10Q96K80 434 aaKnown RBP7.04□□□□□ -1.28
LIMD1-204ENST00000474665 CAPZA3Q96KX2 299 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 ZNF641Q96N77 438 aaPredicted RBP7.04□□□□□ -1.28
LIMD1-204ENST00000474665 TUBGCP5Q96RT8 1024 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 RBM15Q96T37 977 aaKnown RBP eCLIP7.04□□□□□ -1.28
LIMD1-204ENST00000474665 TDRD1Q9BXT4 1180 aaKnown RBP7.04□□□□□ -1.28
LIMD1-204ENST00000474665 POLR1EQ9GZS1 481 aaKnown RBP7.04□□□□□ -1.28
LIMD1-204ENST00000474665 SLC25A51Q9H1U9 297 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 SLC32A1Q9H598 525 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 C6orf106Q9H6K1 298 aaPredicted RBP7.04□□□□□ -1.28
LIMD1-204ENST00000474665 EBF2Q9HAK2 575 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 UBP1Q9NZI7 540 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 FZD4Q9ULV1 537 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 ITM2BQ9Y287 266 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 DRG1Q9Y295 367 aaKnown RBP7.04□□□□□ -1.28
LIMD1-204ENST00000474665 FADS3Q9Y5Q0 445 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 SAR1BQ9Y6B6 198 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 CFAP46Q8IYW2 2715 aa7.04□□□□□ -1.28
LIMD1-204ENST00000474665 TP53BP1Q12888 1972 aaPredicted RBP7.04□□□□□ -1.28
LIMD1-204ENST00000474665 ADAMTS9Q9P2N4 1935 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 UPK3BL1B0FP48 263 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 UPK3BL2E5RIL1 263 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 C1QTNF3-AMACRE9PGA6 284 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 WNT9AO14904 365 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 OPHN1O60890 802 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 RNASEH1O60930 286 aaKnown RBP7.03□□□□□ -1.28
LIMD1-204ENST00000474665 SOCS5O75159 536 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 ZNF217O75362 1048 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 TRIM16O95361 564 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 DNTTP04053 509 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 NTRK1P04629 796 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 ATXN1LP0C7T5 689 aaKnown RBP7.03□□□□□ -1.28
LIMD1-204ENST00000474665 ADRB3P13945 408 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 GM2AP17900 193 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 CES1P23141 567 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 MSNP26038 577 aaKnown RBP7.03□□□□□ -1.28
LIMD1-204ENST00000474665 PSMB4P28070 264 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 CASQ1P31415 396 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 RPL22P35268 128 aaKnown RBP7.03□□□□□ -1.28
LIMD1-204ENST00000474665 ADRA1AP35348 466 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 PTGER3P43115 390 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 MAPK8P45983 427 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 IRX4P78413 519 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 CFHR1Q03591 330 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 BCL2L1Q07817 233 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 ITKQ08881 620 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 RALGDSQ12967 914 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 MSLNQ13421 630 aaPredicted RBP7.03□□□□□ -1.28
LIMD1-204ENST00000474665 FGL2Q14314 439 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 SLC14A2Q15849 920 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 CDKN3Q16667 212 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 UGP2Q16851 508 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 TTC31Q49AM3 519 aaPredicted RBP7.03□□□□□ -1.28
LIMD1-204ENST00000474665 TMEM259Q4ZIN3 620 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 FAM46CQ5VWP2 391 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 SEL1L3Q68CR1 1132 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 PMS2CLQ68D20 193 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 KCTD11Q693B1 232 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 CCNI2Q6ZMN8 369 aaPredicted RBP7.03□□□□□ -1.28
LIMD1-204ENST00000474665 PID1Q7Z2X4 250 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 CBARPQ8N350 705 aaPredicted RBP7.03□□□□□ -1.28
LIMD1-204ENST00000474665 OR14C36Q8NHC7 312 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 HCAR2Q8TDS4 363 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 NSMCE1Q8WV22 266 aa7.03□□□□□ -1.28
LIMD1-204ENST00000474665 MAGOHBQ96A72 148 aaKnown RBP7.03□□□□□ -1.28
LIMD1-204ENST00000474665 FUBP1Q96AE4 644 aaKnown RBP7.03□□□□□ -1.28
LIMD1-204ENST00000474665 EID2BQ96D98 161 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms