RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 APOOQ9BUR5 198 aa18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 POLR1BQ9H9Y6 1135 aa18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 CBX8Q9HC52 389 aa18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 PIEZO2Q9H5I5 2752 aa18.9■□□□□ 0.62
CCDC88B-206ENST00000473405 BOD1L1Q8NFC6 3051 aa18.89■□□□□ 0.62
CCDC88B-206ENST00000473405 SYCE3A1L190 88 aa18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 TTC24A2A3L6 582 aaPredicted RBP18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 CFAP69A5D8W1 941 aa18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 H3BRJ5 948 aa18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 LSSP48449 732 aa18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 SCNN1BP51168 640 aa18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 PDX1P52945 283 aa18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 AP1S1P61966 158 aa18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 FANCCQ00597 558 aa18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 SLC25A11Q02978 314 aaKnown RBP18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 LBRQ14739 615 aaKnown RBP18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 TDRD12Q587J7 1177 aaKnown RBP18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 LIPIQ6XZB0 460 aa18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 LRRC69Q6ZNQ3 347 aa18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 DPPA4Q7L190 304 aa18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 NIPA2Q8N8Q9 360 aa18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 KYQ8NBH2 561 aa18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 SPOCK2Q92563 424 aa18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 HSPH1Q92598 858 aa18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 SYN2Q92777 582 aaPredicted RBP18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 PDXPQ96GD0 296 aa18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 HIC2Q96JB3 615 aa18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 ZNF599Q96NL3 588 aa18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 THAP2Q9H0W7 228 aa18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 PRORYQ9H606 182 aa18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 ASCL3Q9NQ33 180 aa18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 SEPT3Q9UH03 358 aa18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 RAI2Q9Y5P3 530 aa18.89■□□□□ 0.61
CCDC88B-206ENST00000473405 RECQL5O94762 991 aaPredicted RBP18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 RASGRP1O95267 797 aa18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 ELFN1P0C7U0 828 aa18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 RARAP10276 462 aa18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 CR2P20023 1033 aa18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 AMPD1P23109 780 aa18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 HTR1BP28222 390 aa18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 RPIAP49247 311 aa18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 BLKP51451 505 aa18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 SRP54P61011 504 aaKnown RBP18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 TLE3Q04726 772 aa18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 CCDC173Q0VFZ6 552 aa18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 ELOCQ15369 112 aa18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 TMCO3Q6UWJ1 677 aa18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 ENPP7Q6UWV6 458 aa18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 RBM44Q6ZP01 1051 aaKnown RBP18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 PGBD5Q8N414 524 aa18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 GLMNQ92990 594 aa18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 NAT6Q93015 286 aa18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 FUBP1Q96AE4 644 aaKnown RBP18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 ATXN7L3BQ96GX2 97 aa18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 BTBD6Q96KE9 485 aa18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 WDR92Q96MX6 357 aa18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 ZNF578Q96N58 590 aaPredicted RBP18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 KLQ9UEF7 1012 aa18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 ENTPD2Q9Y5L3 495 aa18.88■□□□□ 0.61
CCDC88B-206ENST00000473405 A0A087X0T9 212 aa18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 HTRA2O43464 458 aaPredicted RBP18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 MAFKO60675 156 aa18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 TCEA3O75764 348 aa18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 ALPIP09923 528 aa18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 FAM228BP0C875 321 aa18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 ARL4AP40617 200 aa18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 RENBPP51606 427 aa18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 PCBP4P57723 403 aaKnown RBP18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 KIAA1024LP59773 190 aa18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 POLR2LP62875 67 aaKnown RBP18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 PIGHQ14442 188 aaPredicted RBP18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 BOLA3Q53S33 107 aa18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 LVRNQ6Q4G3 990 aa18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 SPACA3Q8IXA5 215 aa18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 PELI3Q8N2H9 469 aa18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 ARL10Q8N8L6 244 aa18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 TPCN2Q8NHX9 752 aa18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 TEKT4Q8WW24 435 aa18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 ARHGEF17Q96PE2 2063 aaPredicted RBP18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 RBM15Q96T37 977 aaKnown RBP eCLIP18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 CCDC3Q9BQI4 270 aa18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 PCDH18Q9HCL0 1135 aa18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 FGF22Q9HCT0 170 aa18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 SIRPGQ9P1W8 387 aa18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 RABGEF1Q9UJ41 708 aa18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 PADI4Q9UM07 663 aa18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 SATB2Q9UPW6 733 aa18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 BZW2Q9Y6E2 419 aaKnown RBP18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 ZNF462Q96JM2 2506 aa18.87■□□□□ 0.61
CCDC88B-206ENST00000473405 SCN8AQ9UQD0 1980 aa18.86■□□□□ 0.61
CCDC88B-206ENST00000473405 PMS2P1A4D2B8 440 aa18.86■□□□□ 0.61
CCDC88B-206ENST00000473405 TMEM202A6NGA9 273 aa18.86■□□□□ 0.61
CCDC88B-206ENST00000473405 SOCS5O75159 536 aa18.86■□□□□ 0.61
CCDC88B-206ENST00000473405 SERPING1P05155 500 aa18.86■□□□□ 0.61
CCDC88B-206ENST00000473405 CTSEP14091 401 aa18.86■□□□□ 0.61
CCDC88B-206ENST00000473405 ZNF235Q14590 738 aa18.86■□□□□ 0.61
CCDC88B-206ENST00000473405 C3orf38Q5JPI3 329 aa18.86■□□□□ 0.61
CCDC88B-206ENST00000473405 ESRP1Q6NXG1 681 aaKnown RBP18.86■□□□□ 0.61
CCDC88B-206ENST00000473405 IGF2-ASQ6U949 168 aa18.86■□□□□ 0.61
CCDC88B-206ENST00000473405 RD3Q7Z3Z2 195 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms