RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 HMBOX1Q6NT76 420 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 TMEM53Q6P2H8 277 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 Q6ZNX1 250 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 CATSPERGQ6ZRH7 1159 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 TMEM135Q86UB9 458 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 IFNLR1Q8IU57 520 aaPredicted RBP9.09□□□□□ -0.95
COPB1-202ENST00000439561 CENPLQ8N0S6 344 aaPredicted RBP9.09□□□□□ -0.95
COPB1-202ENST00000439561 LSMEM2Q8N112 164 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 SFRP1Q8N474 314 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 PTGR2Q8N8N7 351 aaPredicted RBP9.09□□□□□ -0.95
COPB1-202ENST00000439561 AGBL3Q8NEM8 1001 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 KHSRPQ92945 711 aaKnown RBP eCLIP9.09□□□□□ -0.953e-7■■□□□ 13.2
COPB1-202ENST00000439561 CENPNQ96H22 339 aaPredicted RBP9.09□□□□□ -0.95
COPB1-202ENST00000439561 OSMRQ99650 979 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 ANKRD60Q9BZ19 345 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 GBA3Q9H227 469 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 NOL6Q9H6R4 1146 aaKnown RBP9.09□□□□□ -0.95
COPB1-202ENST00000439561 EXD2Q9NVH0 621 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 IPO11Q9UI26 975 aaKnown RBP9.09□□□□□ -0.95
COPB1-202ENST00000439561 TIMM22Q9Y584 194 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 SOWAHBA6NEL2 793 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 A8MT66 165 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 C19orf81C9J6K1 198 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 MTSS1O43312 755 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 TBC1D4O60343 1298 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 TSPAN3O60637 253 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 COQ9O75208 318 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 RBP1P09455 135 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 LTA4HP09960 611 aaKnown RBP9.09□□□□□ -0.95
COPB1-202ENST00000439561 KCNA5P22460 613 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 OXTRP30559 389 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 ALDH3B2P48448 385 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 MAXP61244 160 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 TTLL4Q14679 1199 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 PKN3Q6P5Z2 889 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 DCDC5Q6ZRR9 648 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 ZNF555Q8NEP9 628 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 FBXO30Q8TB52 745 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 FIG4Q92562 907 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 NSMCE2Q96MF7 247 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 TMEM74Q96NL1 305 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 HBEGFQ99075 208 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 MLPHQ9BV36 600 aaPredicted RBP9.09□□□□□ -0.95
COPB1-202ENST00000439561 CXCL16Q9H2A7 254 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 CACNG4Q9UBN1 327 aa9.09□□□□□ -0.95
COPB1-202ENST00000439561 AAR2Q9Y312 384 aaKnown RBP9.09□□□□□ -0.95
COPB1-202ENST00000439561 FOCADQ5VW36 1801 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 C16orf96A6NNT2 1141 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 ARPC2O15144 300 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 RECQL4O94761 1208 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 CHEK2O96017 543 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 FUCA1P04066 466 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 S100BP04271 92 aaPredicted RBP9.08□□□□□ -0.96
COPB1-202ENST00000439561 PIM1P11309 404 aaPredicted RBP9.08□□□□□ -0.96
COPB1-202ENST00000439561 IL7RP16871 459 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 CAPGP40121 348 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 HK2P52789 917 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 OAZ1P54368 228 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 DNASE1L3Q13609 305 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 PAN2Q504Q3 1202 aaKnown RBP9.08□□□□□ -0.96
COPB1-202ENST00000439561 BROXQ5VW32 411 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 PPP4R4Q6NUP7 873 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 CRTC3Q6UUV7 619 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 TICAM1Q8IUC6 712 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 CMTR2Q8IYT2 770 aaKnown RBP9.08□□□□□ -0.96
COPB1-202ENST00000439561 CPSF7Q8N684 471 aaKnown RBP9.08□□□□□ -0.96
COPB1-202ENST00000439561 TFAP2CQ92754 450 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 CCDC126Q96EE4 140 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 OTUD5Q96G74 571 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 GLT1D1Q96MS3 346 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 DACH2Q96NX9 599 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 KCNA7Q96RP8 456 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 BDH2Q9BUT1 245 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 NPLQ9BXD5 320 aaPredicted RBP9.08□□□□□ -0.96
COPB1-202ENST00000439561 NDEL1Q9GZM8 345 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 SACM1LQ9NTJ5 587 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 WDR37Q9Y2I8 494 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 CITO14578 2027 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 COL16A1Q07092 1604 aaPredicted RBP9.08□□□□□ -0.96
COPB1-202ENST00000439561 AGRPO00253 132 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 PIP5K1BO14986 540 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 LSM1O15116 133 aaKnown RBP9.08□□□□□ -0.96
COPB1-202ENST00000439561 SLC22A2O15244 555 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 SNAP91O60641 907 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 ANXA9O76027 345 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 SERPINB1P30740 379 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 GMPSP49915 693 aaPredicted RBP9.08□□□□□ -0.96
COPB1-202ENST00000439561 INCA1Q0VD86 236 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 TRAP1Q12931 704 aaKnown RBP9.08□□□□□ -0.96
COPB1-202ENST00000439561 PPIL2Q13356 520 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 RFTN1Q14699 578 aaPredicted RBP9.08□□□□□ -0.96
COPB1-202ENST00000439561 PAGE2BQ5JRK9 111 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 TAF2Q6P1X5 1199 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 NPWQ8N729 165 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 TERB1Q8NA31 727 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 SLCO4A1Q96BD0 722 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 TSPAN17Q96FV3 270 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 MUS81Q96NY9 551 aa9.08□□□□□ -0.96
COPB1-202ENST00000439561 NXF3Q9H4D5 531 aaKnown RBP9.08□□□□□ -0.96
COPB1-202ENST00000439561 AKTIPQ9H8T0 292 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms