RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 KCTD16Q68DU8 428 aa14.6□□□□□ -0.07
SDC1-204ENST00000429035 PCSK4Q6UW60 755 aa14.6□□□□□ -0.07
SDC1-204ENST00000429035 ARHGAP36Q6ZRI8 547 aa14.6□□□□□ -0.07
SDC1-204ENST00000429035 RBM43Q6ZSC3 357 aaKnown RBP14.6□□□□□ -0.07
SDC1-204ENST00000429035 RFX8Q6ZV50 586 aa14.6□□□□□ -0.07
SDC1-204ENST00000429035 TAF8Q7Z7C8 310 aa14.6□□□□□ -0.07
SDC1-204ENST00000429035 SRLQ86TD4 932 aa14.6□□□□□ -0.07
SDC1-204ENST00000429035 Q8N9G6 341 aaPredicted RBP14.6□□□□□ -0.07
SDC1-204ENST00000429035 PLA2G15Q8NCC3 412 aa14.6□□□□□ -0.07
SDC1-204ENST00000429035 PRR11Q96HE9 360 aaPredicted RBP14.6□□□□□ -0.07
SDC1-204ENST00000429035 ZNF641Q96N77 438 aaPredicted RBP14.6□□□□□ -0.07
SDC1-204ENST00000429035 SLC46A1Q96NT5 459 aa14.6□□□□□ -0.07
SDC1-204ENST00000429035 TUBGCP5Q96RT8 1024 aa14.6□□□□□ -0.07
SDC1-204ENST00000429035 STRADBQ9C0K7 418 aa14.6□□□□□ -0.07
SDC1-204ENST00000429035 GCN1Q92616 2671 aaKnown RBP14.6□□□□□ -0.07
SDC1-204ENST00000429035 GOLGA6CA6NDK9 693 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 GOLGA6BA6NDN3 693 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 D6RAR5 112 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 PRPSAP2O60256 369 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 RNF8O76064 485 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 RECQL5O94762 991 aaPredicted RBP14.59□□□□□ -0.07
SDC1-204ENST00000429035 GOLGA6DP0CG33 693 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 ATP1A3P13637 1013 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 HGFP14210 728 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 PLA2G2AP14555 144 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 ERCC2P18074 760 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 SCNN1BP51168 640 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 INHBCP55103 352 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 RALGDSQ12967 914 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 LY6DQ14210 128 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 ACOX1Q15067 660 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 ERMARDQ5T6L9 678 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 DENND2CQ68D51 928 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 IGF2-ASQ6U949 168 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 FBXO39Q8N4B4 442 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 NPWQ8N729 165 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 LSM14AQ8ND56 463 aaKnown RBP14.59□□□□□ -0.07
SDC1-204ENST00000429035 PDCD6IPQ8WUM4 868 aaKnown RBP14.59□□□□□ -0.07
SDC1-204ENST00000429035 OR1E3Q8WZA6 343 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 ZNF653Q96CK0 615 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 MRPL40Q9NQ50 206 aaKnown RBP14.59□□□□□ -0.07
SDC1-204ENST00000429035 PARVAQ9NVD7 372 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 GOLGA6AQ9NYA3 693 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 PISDQ9UG56 409 aa14.59□□□□□ -0.07
SDC1-204ENST00000429035 COL6A6A6NMZ7 2263 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 LRRC53A6NM62 1247 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 CDRT15L2A8MXV6 281 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 GOLGA6L22H0YM25 854 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 NTN3O00634 580 aaPredicted RBP14.58□□□□□ -0.08
SDC1-204ENST00000429035 PLD2O14939 933 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 TEX33O43247 280 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 ITGA2BP08514 1039 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 JMJD7P0C870 316 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 KIAA1024LP59773 190 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 CLN3Q13286 438 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 MAMLD1Q13495 774 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 ZNF235Q14590 738 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 PPP1R2P3Q6NXS1 205 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 LVRNQ6Q4G3 990 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 CCDC81Q6ZN84 652 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 RAB11FIP2Q7L804 512 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 CCNJLQ8IV13 435 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 ARHGAP12Q8IWW6 846 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 FAM46DQ8NEK8 389 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 OR56A4Q8NGH8 313 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 HCAR2Q8TDS4 363 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 FUBP1Q96AE4 644 aaKnown RBP14.58□□□□□ -0.08
SDC1-204ENST00000429035 LIN37Q96GY3 246 aaPredicted RBP14.58□□□□□ -0.08
SDC1-204ENST00000429035 TRIM7Q9C029 511 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 LRRN3Q9H3W5 708 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 WDR26Q9H7D7 661 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 FGF22Q9HCT0 170 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 MYO1AQ9UBC5 1043 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 CNOT8Q9UFF9 292 aaKnown RBP14.58□□□□□ -0.08
SDC1-204ENST00000429035 ATXN7L1Q9ULK2 861 aaPredicted RBP14.58□□□□□ -0.08
SDC1-204ENST00000429035 MGAQ8IWI9 3026 aa14.58□□□□□ -0.08
SDC1-204ENST00000429035 TTC24A2A3L6 582 aaPredicted RBP14.57□□□□□ -0.08
SDC1-204ENST00000429035 TMEM202A6NGA9 273 aa14.57□□□□□ -0.08
SDC1-204ENST00000429035 KELP23276 732 aa14.57□□□□□ -0.08
SDC1-204ENST00000429035 MIPP30301 263 aa14.57□□□□□ -0.08
SDC1-204ENST00000429035 NCAPHQ15003 741 aa14.57□□□□□ -0.08
SDC1-204ENST00000429035 SMTNL2Q2TAL5 461 aa14.57□□□□□ -0.08
SDC1-204ENST00000429035 MAP9Q49MG5 647 aa14.57□□□□□ -0.08
SDC1-204ENST00000429035 CCDC183Q5T5S1 534 aa14.57□□□□□ -0.08
SDC1-204ENST00000429035 TMCO4Q5TGY1 634 aa14.57□□□□□ -0.08
SDC1-204ENST00000429035 LIPIQ6XZB0 460 aa14.57□□□□□ -0.08
SDC1-204ENST00000429035 DPPA4Q7L190 304 aa14.57□□□□□ -0.08
SDC1-204ENST00000429035 APTXQ7Z2E3 356 aaKnown RBP14.57□□□□□ -0.08
SDC1-204ENST00000429035 CLEC14AQ86T13 490 aa14.57□□□□□ -0.08
SDC1-204ENST00000429035 NUS1Q96E22 293 aa14.57□□□□□ -0.08
SDC1-204ENST00000429035 TMEM74Q96NL1 305 aa14.57□□□□□ -0.08
SDC1-204ENST00000429035 RBM15Q96T37 977 aaKnown RBP eCLIP14.57□□□□□ -0.08
SDC1-204ENST00000429035 DPEP2Q9H4A9 486 aa14.57□□□□□ -0.08
SDC1-204ENST00000429035 CYP4F12Q9HCS2 524 aa14.57□□□□□ -0.08
SDC1-204ENST00000429035 SEPT3Q9UH03 358 aa14.57□□□□□ -0.08
SDC1-204ENST00000429035 LOXL2Q9Y4K0 774 aa14.57□□□□□ -0.08
SDC1-204ENST00000429035 A0A1W2PQM1 296 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 EIF3CLB5ME19 914 aaKnown RBP14.56□□□□□ -0.08
SDC1-204ENST00000429035 H3BRJ5 948 aa14.56□□□□□ -0.08
SDC1-204ENST00000429035 CPP00450 1065 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms