RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 AGAP3Q96P47 875 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 VAT1Q99536 393 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 GABRG3Q99928 467 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 NT5MQ9NPB1 228 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 FGFR1OP2Q9NVK5 253 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 TTLL3Q9Y4R7 772 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 EDDM13A0A1B0GTR0 161 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 TNFRSF10AO00220 468 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 MUSKO15146 869 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 PI15O43692 258 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 BNIP3LO60238 219 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 SYNCRIPO60506 623 aaKnown RBP13.53□□□□□ -0.24
LIMS1-204ENST00000409441 ATG13O75143 517 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 SPAG7O75391 227 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 METTL18O95568 372 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 GSTA1P08263 222 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 INHBAP08476 426 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 CA4P22748 312 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 LIG3P49916 1009 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 SNRPD1P62314 119 aaKnown RBP13.53□□□□□ -0.24
LIMS1-204ENST00000409441 ACTN3Q08043 901 aaPredicted RBP13.53□□□□□ -0.24
LIMS1-204ENST00000409441 ITKQ08881 620 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 GAS6Q14393 721 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 PDK4Q16654 411 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 CARD16Q5EG05 197 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 EOGTQ5NDL2 527 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 ANKRD20A2Q5SQ80 823 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 C9orf64Q5T6V5 341 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 ANKRD20A1Q5TYW2 823 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 ANKRD20A3Q5VUR7 823 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 Q6ZVU0 165 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 PID1Q7Z2X4 250 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 C4orf33Q8N1A6 199 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 ERLEC1Q96DZ1 483 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 EXOC2Q96KP1 924 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 TEKT5Q96M29 485 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 TM6SF2Q9BZW4 377 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 EPHX3Q9H6B9 360 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 MLXIPLQ9NP71 852 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 LHX3Q9UBR4 397 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 ZC3H7BQ9UGR2 993 aaKnown RBP13.53□□□□□ -0.24
LIMS1-204ENST00000409441 ZNF180Q9UJW8 692 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 TRHDEQ9UKU6 1024 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 A0A1W2PPM1 405 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 TTC24A2A3L6 582 aaPredicted RBP13.52□□□□□ -0.25
LIMS1-204ENST00000409441 CHURC1-FNTBB4DL54 471 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 ZBTB24O43167 697 aaPredicted RBP13.52□□□□□ -0.25
LIMS1-204ENST00000409441 HLA-DQB2P05538 268 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 RECQLP46063 649 aaPredicted RBP13.52□□□□□ -0.25
LIMS1-204ENST00000409441 RPS9P46781 194 aaKnown RBP13.52□□□□□ -0.25
LIMS1-204ENST00000409441 RGRP47804 291 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 SCNN1BP51168 640 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 MAXP61244 160 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 MYLK3Q32MK0 819 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 KBTBD12Q3ZCT8 623 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 ATXN7L2Q5T6C5 722 aaPredicted RBP13.52□□□□□ -0.25
LIMS1-204ENST00000409441 LGSNQ5TDP6 509 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 FAXCQ5TGI0 409 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 HHATQ5VTY9 493 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 CWF19L1Q69YN2 538 aaKnown RBP13.52□□□□□ -0.25
LIMS1-204ENST00000409441 DPY19L3Q6ZPD9 716 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 CYS1Q717R9 158 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 SPATA21Q7Z572 469 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 SLC26A11Q86WA9 606 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 PLPP6Q8IY26 295 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 ZNF567Q8N184 647 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 RYBPQ8N488 228 aaPredicted RBP13.52□□□□□ -0.25
LIMS1-204ENST00000409441 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.52□□□□□ -0.25
LIMS1-204ENST00000409441 OR2AP1Q8NGE2 309 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 OR2A12Q8NGT7 310 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 PBXIP1Q96AQ6 731 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 CFAP36Q96G28 342 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 EBNA1BP2Q99848 306 aaKnown RBP13.52□□□□□ -0.25
LIMS1-204ENST00000409441 COL25A1Q9BXS0 654 aaPredicted RBP13.52□□□□□ -0.25
LIMS1-204ENST00000409441 PRSS16Q9NQE7 514 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 HAUS2Q9NVX0 235 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 POLR3BQ9NW08 1133 aaPredicted RBP13.52□□□□□ -0.25
LIMS1-204ENST00000409441 KLHL8Q9P2G9 620 aaPredicted RBP13.52□□□□□ -0.25
LIMS1-204ENST00000409441 MMP17Q9ULZ9 603 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 ARL2BPQ9Y2Y0 163 aa13.52□□□□□ -0.25
LIMS1-204ENST00000409441 A0A1W2PQF6 199 aa13.51□□□□□ -0.25
LIMS1-204ENST00000409441 SIN3BO75182 1162 aa13.51□□□□□ -0.25
LIMS1-204ENST00000409441 POP4O95707 220 aaKnown RBP13.51□□□□□ -0.25
LIMS1-204ENST00000409441 GSRP00390 522 aa13.51□□□□□ -0.25
LIMS1-204ENST00000409441 C1QAP02745 245 aa13.51□□□□□ -0.25
LIMS1-204ENST00000409441 MT-ND3P03897 115 aa13.51□□□□□ -0.25
LIMS1-204ENST00000409441 HOXB2P14652 356 aa13.51□□□□□ -0.25
LIMS1-204ENST00000409441 KRT4P19013 534 aa13.51□□□□□ -0.25
LIMS1-204ENST00000409441 FOXN2P32314 431 aa13.51□□□□□ -0.25
LIMS1-204ENST00000409441 RPA3P35244 121 aaPredicted RBP13.51□□□□□ -0.25
LIMS1-204ENST00000409441 CLCN5P51795 746 aa13.51□□□□□ -0.25
LIMS1-204ENST00000409441 KIAA1211LQ6NV74 962 aa13.51□□□□□ -0.25
LIMS1-204ENST00000409441 ZNF534Q76KX8 674 aa13.51□□□□□ -0.25
LIMS1-204ENST00000409441 TRPM8Q7Z2W7 1104 aa13.51□□□□□ -0.25
LIMS1-204ENST00000409441 LRRC6Q86X45 466 aa13.51□□□□□ -0.25
LIMS1-204ENST00000409441 CCNJLQ8IV13 435 aa13.51□□□□□ -0.25
LIMS1-204ENST00000409441 AGGF1Q8N302 714 aaeCLIP13.51□□□□□ -0.25
LIMS1-204ENST00000409441 BANPQ8N9N5 519 aa13.51□□□□□ -0.25
LIMS1-204ENST00000409441 GSDMBQ8TAX9 411 aa13.51□□□□□ -0.25
LIMS1-204ENST00000409441 MRRFQ96E11 262 aaKnown RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms