RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 PCYT1AP49585 367 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 VPS41P49754 854 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 SLURP1P55000 103 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 ACTR3P61158 418 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 RAB1AP62820 205 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 TUBA1BP68363 451 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 ADAM8P78325 824 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 FKBP3Q00688 224 aaKnown RBP5.56□□□□□ -1.52
CLK1-202ENST00000409403 PPP2R5CQ13362 524 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 RASA2Q15283 850 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 CNN3Q15417 329 aaKnown RBP5.56□□□□□ -1.52
CLK1-202ENST00000409403 C1orf141Q5JVX7 400 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 RFWD3Q6PCD5 774 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 FAM47EQ6ZV65 393 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 FRA10AC1Q70Z53 315 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 TUBA1AQ71U36 451 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 HEATR3Q7Z4Q2 680 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 TDRPQ86YL5 185 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 CMTM4Q8IZR5 234 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 TTC39CQ8N584 583 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 MINDY2Q8NBR6 621 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 REPS2Q8NFH8 660 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 OR5M3Q8NGP4 307 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 GIPC3Q8TF64 312 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 FAM172AQ8WUF8 416 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 PRPF31Q8WWY3 499 aaKnown RBP5.56□□□□□ -1.52
CLK1-202ENST00000409403 SLCO2A1Q92959 643 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 MYD88Q99836 296 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 VRK1Q99986 396 aaPredicted RBP5.56□□□□□ -1.52
CLK1-202ENST00000409403 DDX50Q9BQ39 737 aaKnown RBP5.56□□□□□ -1.52
CLK1-202ENST00000409403 HGH1Q9BTY7 390 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 TRIM9Q9C026 710 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 RBM38Q9H0Z9 239 aaKnown RBP5.56□□□□□ -1.52
CLK1-202ENST00000409403 NAPBQ9H115 298 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 PIH1D3Q9NQM4 214 aaKnown RBP5.56□□□□□ -1.52
CLK1-202ENST00000409403 GID8Q9NWU2 228 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 RAB26Q9ULW5 256 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 PCDHA3Q9Y5H8 950 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 TMEM114B3SHH9 223 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 RASA4BC9J798 803 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 MCF2LO15068 1137 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 RASA4O43374 803 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 DENRO43583 198 aaKnown RBP5.56□□□□□ -1.52
CLK1-202ENST00000409403 TM7SF2O76062 418 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 BAG2O95816 211 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 IL1BP01584 269 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 ANXA1P04083 346 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 PCP11498 1178 aaKnown RBP5.56□□□□□ -1.52
CLK1-202ENST00000409403 NFKBIAP25963 317 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 CTNNA2P26232 953 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 MCM7P33993 719 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 CA8P35219 290 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 ADD2P35612 726 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 CASRP41180 1078 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 RPL21P46778 160 aaKnown RBP5.56□□□□□ -1.52
CLK1-202ENST00000409403 FLT3LGP49771 235 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 CDK9P50750 372 aaKnown RBP5.56□□□□□ -1.52
CLK1-202ENST00000409403 BCAP31P51572 246 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 GJA9P57773 515 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 CDK16Q00536 496 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 TLE1Q04724 770 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 CDK18Q07002 472 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 MTM1Q13496 603 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 SEMA5AQ13591 1074 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 CYP1B1Q16678 543 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 LONRF1Q17RB8 773 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 USP41Q3LFD5 358 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 PRAMEF14Q5SWL7 426 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 C1orf146Q5VVC0 180 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 RHOT2Q8IXI1 618 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 SRRM1Q8IYB3 904 aaKnown RBP5.56□□□□□ -1.52
CLK1-202ENST00000409403 CCDC105Q8IYK2 499 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 PLBD2Q8NHP8 589 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 MTBPQ96DY7 904 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 SLC35A4Q96G79 324 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 CALML4Q96GE6 196 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 CCDC138Q96M89 665 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 GPHA2Q96T91 129 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 NUF2Q9BZD4 464 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 IMPG2Q9BZV3 1241 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 NDEL1Q9GZM8 345 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 C1orf21Q9H246 121 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 CDC42EP4Q9H3Q1 356 aaKnown RBP5.56□□□□□ -1.52
CLK1-202ENST00000409403 CLK4Q9HAZ1 481 aaKnown RBP5.56□□□□□ -1.52
CLK1-202ENST00000409403 ALG13Q9NP73 1137 aaKnown RBP5.56□□□□□ -1.52
CLK1-202ENST00000409403 SH3GLB2Q9NR46 395 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 RRN3Q9NYV6 651 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 NCDNQ9UBB6 729 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 RSL24D1Q9UHA3 163 aaKnown RBP5.56□□□□□ -1.52
CLK1-202ENST00000409403 GNPTGQ9UJJ9 305 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 CCPG1Q9ULG6 757 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 SNX9Q9Y5X1 595 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 SCINQ9Y6U3 715 aa5.56□□□□□ -1.52
CLK1-202ENST00000409403 FUOMA2VDF0 154 aa5.55□□□□□ -1.52
CLK1-202ENST00000409403 PMS2P1A4D2B8 440 aa5.55□□□□□ -1.52
CLK1-202ENST00000409403 RSPH10B2B2RC85 870 aa5.55□□□□□ -1.52
CLK1-202ENST00000409403 H3BUI4 141 aa5.55□□□□□ -1.52
CLK1-202ENST00000409403 EIF3FO00303 357 aaPredicted RBP5.55□□□□□ -1.52
CLK1-202ENST00000409403 TXNDC9O14530 226 aa5.55□□□□□ -1.52
CLK1-202ENST00000409403 CASQ2O14958 399 aaPredicted RBP5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms