RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 CALB1P05937 261 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 MYL3P08590 195 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 CTSAP10619 480 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 PIM1P11309 404 aaPredicted RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 KRT13P13646 458 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 TSHRP16473 764 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 HMGA1P17096 107 aaKnown RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 GOT1P17174 413 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 HOXB9P17482 250 aaPredicted RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 TPSB2P20231 275 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 CYP2B6P20813 491 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 RPA3P35244 121 aaPredicted RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 STAT5AP42229 794 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 MATKP42679 507 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 LSSP48449 732 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 SGSHP51688 502 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 KPNA1P52294 538 aaPredicted RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 MAGOHP61326 146 aaKnown RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 ZP2Q05996 745 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 PPIDQ08752 370 aaKnown RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 CCDC15Q0P6D6 951 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 TPSAB1Q15661 275 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 PKN2Q16513 984 aaKnown RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 FSCN1Q16658 493 aaKnown RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 KYNUQ16719 465 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 ZXDCQ2QGD7 858 aaPredicted RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 P3H1Q32P28 736 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 EMC4Q5J8M3 183 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 TOR2AQ5JU69 321 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 MSANTD2Q6P1R3 559 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 ANKRD12Q6UB98 2062 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 KDELC1Q6UW63 502 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 NAPRTQ6XQN6 538 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 SCARA5Q6ZMJ2 495 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 ACOT1Q86TX2 421 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 ZBTB46Q86UZ6 589 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 PROSER1Q86XN7 944 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 PSTKQ8IV42 348 aaKnown RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 NETO2Q8NC67 525 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 DEPTORQ8TB45 409 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 ASB15Q8WXK1 588 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 MAGOHBQ96A72 148 aaKnown RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 TRMT2BQ96GJ1 504 aaKnown RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 IFT74Q96LB3 600 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 C8orf48Q96LL4 319 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 NLRP4Q96MN2 994 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 XPO6Q96QU8 1125 aaKnown RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 PARK7Q99497 189 aaKnown RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 IL12RB2Q99665 862 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 LRFN3Q9BTN0 628 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 HEMGNQ9BXL5 484 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 FRMD8P1Q9BZ68 369 aaPredicted RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 DPH5Q9H2P9 285 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 AZI2Q9H6S1 392 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 CASS4Q9NQ75 786 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 EIF2B3Q9NR50 452 aaKnown RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 ARHGEF3Q9NR81 526 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 TRMT13Q9NUP7 481 aaKnown RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 SLC17A7Q9P2U7 560 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 TNFRSF10DQ9UBN6 386 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 DNAJB4Q9UDY4 337 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 IKZF3Q9UKT9 509 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 ST3GAL5Q9UNP4 418 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 SPO11Q9Y5K1 396 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 SNX10Q9Y5X0 201 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 CDY2AQ9Y6F7 541 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 SCINQ9Y6U3 715 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 PDE4DIPQ5VU43 2346 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 LRRC14BA6NHZ5 514 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 RRN3P2A6NIE6 340 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 DRGXA6NNA5 263 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 POLR3GO15318 223 aaPredicted RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 ADAM12O43184 909 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 BRINP1O60477 761 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 MPIG6BO95866 241 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 AGTP01019 485 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 ALDH2P05091 517 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 ASGR1P07306 291 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 F7P08709 466 aaPredicted RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 ATXN1LP0C7T5 689 aaKnown RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 SETSIPP0DME0 302 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 FGF3P11487 239 aaPredicted RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 CR2P20023 1033 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 TGM2P21980 687 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 LPOP22079 712 aaPredicted RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 RBL1P28749 1068 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 SSTR4P31391 388 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 MATR3P43243 847 aaKnown RBP eCLIP2.36□□□□□ -2.031e-6■■■□□ 19.2
VPS54-202ENST00000354504 GPR15P49685 360 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 OSTNP61366 133 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 NCALDP61601 193 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 IRX3P78415 501 aaPredicted RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 TAP1Q03518 808 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 KCNC3Q14003 757 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 KCTD2Q14681 263 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 ZKSCAN8Q15776 578 aaPredicted RBP2.36□□□□□ -2.03
VPS54-202ENST00000354504 KCNA10Q16322 511 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 ZSCAN26Q16670 478 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 C3orf36Q3SXR2 165 aa2.36□□□□□ -2.03
VPS54-202ENST00000354504 FAM133BQ5BKY9 247 aaKnown RBP2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms