RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 RBL1P28749 1068 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 HOXA11P31270 313 aaPredicted RBP11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 CCR1P32246 355 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 GRIA3P42263 894 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 CDH18Q13634 790 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 DGCR6Q14129 220 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 PIWIL4Q7Z3Z4 852 aaKnown RBP11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 STARD8Q92502 1023 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 FAM136AQ96C01 138 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 CHID1Q9BWS9 393 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 POMKQ9H5K3 350 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 ETNK2Q9NVF9 386 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 DYRK1BQ9Y463 629 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 ZSCAN5DPP0CG00 497 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 PIK3CGP48736 1102 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 BLMHQ13867 455 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 ZNF846Q147U1 533 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 AMHR2Q16671 573 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 CBWD6Q4V339 395 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 CBWD3Q5JTY5 395 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 CBWD5Q5RIA9 395 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 FAM171A1Q5VUB5 890 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 KIAA0408Q6ZU52 694 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 ALLCQ8N6M5 410 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 POC5Q8NA72 575 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 SNX27Q96L92 541 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 TCF12Q99081 682 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 EPB41L4BQ9H329 900 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 ARHGEF3Q9NR81 526 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 EHD3Q9NZN3 535 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 GSTK1Q9Y2Q3 226 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 MTF2Q9Y483 593 aaPredicted RBP11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 MRPL42Q9Y6G3 142 aaKnown RBP11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 LACTBL1A8MY62 500 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 TPP1O14773 563 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 IDH3BO43837 385 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 ASS1P00966 412 aaKnown RBP11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 HTRA4P83105 476 aaPredicted RBP11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 TRAP1Q12931 704 aaKnown RBP11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 CAMK2GQ13555 558 aaPredicted RBP11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 PHKG1Q16816 387 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 BMT2Q1RMZ1 405 aa11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 CWF19L1Q69YN2 538 aaKnown RBP11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 RTL3Q8N8U3 475 aaKnown RBP11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 ABI2Q9NYB9 513 aaPredicted RBP11.9□□□□□ -0.5
SYNGAP1-201ENST00000293748 CYB561D2O14569 222 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 KLRC4O43908 158 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 ITGAVP06756 1048 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 TPH1P17752 444 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 FGFR3P22607 806 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 ATP5F1P24539 256 aaPredicted RBP11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 S100A3P33764 101 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 RAP1GAPP47736 663 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 LHX1P48742 406 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 NAA20P61599 178 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 YWHAZP63104 245 aaKnown RBP11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 ADCY4Q8NFM4 1077 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 NSUN3Q9H649 340 aaKnown RBP11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 SMIM28A0A1B0GU29 152 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 AMPD1P23109 780 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 NDUFV1P49821 464 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 PERM1Q5SV97 790 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 PLPP4Q5VZY2 271 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 SDE2Q6IQ49 451 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 OLFML1Q6UWY5 402 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 AGMOQ6ZNB7 445 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 PQLC1Q8N2U9 271 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 TCF25Q9BQ70 676 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 WDR12Q9GZL7 423 aaKnown RBP11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 IL22Q9GZX6 179 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 IGFLR1Q9H665 355 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 EURLQ9NYK6 297 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 PSMD13Q9UNM6 376 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 USP20Q9Y2K6 914 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 RAP2CQ9Y3L5 183 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 SPACA6W5XKT8 324 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 PRRG1O14668 218 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 ALOX15BO15296 676 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 MTTPP55157 894 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 BNIP1Q12981 228 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 RFX4Q33E94 735 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 LIN52Q52LA3 116 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 CES5AQ6NT32 575 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 ERAP2Q6P179 960 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 KRT74Q7RTS7 529 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 KLHL23Q8NBE8 558 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 POF1BQ8WVV4 589 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 CDCA3Q99618 268 aaPredicted RBP11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 SCUBE2Q9NQ36 999 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 MIEF1Q9NQG6 463 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 C8orf4Q9NR00 106 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 PADI4Q9UM07 663 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 INVSQ9Y283 1065 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 HBS1LQ9Y450 684 aaKnown RBP11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 ANKRD63C9JTQ0 380 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 F8VP50 259 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 RGS14O43566 566 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 TSPAN19P0C672 248 aa11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 PAICSP22234 425 aaKnown RBP11.89□□□□□ -0.51
SYNGAP1-201ENST00000293748 S100A1P23297 94 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms