RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 SDR16C5Q8N3Y7 309 aa12.84□□□□□ -0.35
CD44-203ENST00000278386 LSM14AQ8ND56 463 aaKnown RBP12.84□□□□□ -0.35
CD44-203ENST00000278386 ZNF653Q96CK0 615 aa12.84□□□□□ -0.35
CD44-203ENST00000278386 CCDC97Q96F63 343 aaPredicted RBP12.84□□□□□ -0.35
CD44-203ENST00000278386 EIF3CQ99613 913 aaKnown RBP12.84□□□□□ -0.35
CD44-203ENST00000278386 HSD3B7Q9H2F3 369 aa12.84□□□□□ -0.35
CD44-203ENST00000278386 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.84□□□□□ -0.35
CD44-203ENST00000278386 MYO6Q9UM54 1294 aa12.84□□□□□ -0.35
CD44-203ENST00000278386 GCN1Q92616 2671 aaKnown RBP12.84□□□□□ -0.35
CD44-203ENST00000278386 ZFC3H1O60293 1989 aaKnown RBP12.83□□□□□ -0.35
CD44-203ENST00000278386 MGAQ8IWI9 3026 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 D6RAR5 112 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 TEX33O43247 280 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 TNFSF15O95150 251 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 MBD3O95983 291 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 CSNK1DP48730 415 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 SCNN1BP51168 640 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 KIAA1024LP59773 190 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 RHDQ02161 417 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 RALGDSQ12967 914 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 ZNF235Q14590 738 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 ZSCAN23Q3MJ62 389 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 PLEKHA7Q6IQ23 1121 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 LVRNQ6Q4G3 990 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 NYAP1Q6ZVC0 841 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 IRF2BP2Q7Z5L9 587 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 JAMLQ86YT9 394 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 ARHGAP12Q8IWW6 846 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 NPWQ8N729 165 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 PLA2G15Q8NCC3 412 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 OR56A4Q8NGH8 313 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 SLC46A1Q96NT5 459 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 NAT10Q9H0A0 1025 aaKnown RBP12.83□□□□□ -0.36
CD44-203ENST00000278386 CNOT8Q9UFF9 292 aaKnown RBP12.83□□□□□ -0.36
CD44-203ENST00000278386 RABGEF1Q9UJ41 708 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 MOSPD1Q9UJG1 213 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 SCINQ9Y6U3 715 aa12.83□□□□□ -0.36
CD44-203ENST00000278386 LRRC10BA6NIK2 292 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 A8MX80 341 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 B4DGG1 531 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 NTN3O00634 580 aaPredicted RBP12.82□□□□□ -0.36
CD44-203ENST00000278386 RECQL5O94762 991 aaPredicted RBP12.82□□□□□ -0.36
CD44-203ENST00000278386 ITGA2BP08514 1039 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 KELP23276 732 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 MIPP30301 263 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 RENBPP51606 427 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 INHBCP55103 352 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 CFHR1Q03591 330 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 IL10RBQ08334 325 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 VAC14Q08AM6 782 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 RFTN1Q14699 578 aaPredicted RBP12.82□□□□□ -0.36
CD44-203ENST00000278386 ACOX1Q15067 660 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 AGERQ15109 404 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 ANO6Q4KMQ2 910 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 FILIP1LQ4L180 1135 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 TMCO4Q5TGY1 634 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 LIPIQ6XZB0 460 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 DPPA4Q7L190 304 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 TAF8Q7Z7C8 310 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 B3GNT8Q7Z7M8 397 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 OR6C4Q8NGE1 309 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 PDCD6IPQ8WUM4 868 aaKnown RBP12.82□□□□□ -0.36
CD44-203ENST00000278386 OR1E3Q8WZA6 343 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 LIN37Q96GY3 246 aaPredicted RBP12.82□□□□□ -0.36
CD44-203ENST00000278386 PRR11Q96HE9 360 aaPredicted RBP12.82□□□□□ -0.36
CD44-203ENST00000278386 RBM15Q96T37 977 aaKnown RBP eCLIP12.82□□□□□ -0.36
CD44-203ENST00000278386 SYT11Q9BT88 431 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 FOXP3Q9BZS1 431 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 TRIM7Q9C029 511 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 STRADBQ9C0K7 418 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 HAUS4Q9H6D7 363 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 WDR26Q9H7D7 661 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 SUDS3Q9H7L9 328 aaPredicted RBP12.82□□□□□ -0.36
CD44-203ENST00000278386 ZWILCHQ9H900 591 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 FGF22Q9HCT0 170 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 MRPL40Q9NQ50 206 aaKnown RBP12.82□□□□□ -0.36
CD44-203ENST00000278386 MYO1AQ9UBC5 1043 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 SEPT3Q9UH03 358 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 ATMQ13315 3056 aa12.82□□□□□ -0.36
CD44-203ENST00000278386 TMEM202A6NGA9 273 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 TMEM191CA6NGB0 347 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 CDRT15L2A8MXV6 281 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 H3BRJ5 948 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 AGRPO00253 132 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 PLD2O14939 933 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 LRCH4O75427 683 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 CPP00450 1065 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 ARL4AP40617 200 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 MLLT3P42568 568 aaPredicted RBP12.81□□□□□ -0.36
CD44-203ENST00000278386 ZNF135P52742 658 aaPredicted RBP12.81□□□□□ -0.36
CD44-203ENST00000278386 AP1S1P61966 158 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 POLR2LP62875 67 aaKnown RBP12.81□□□□□ -0.36
CD44-203ENST00000278386 CCL7P80098 99 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 KLHL30Q0D2K2 578 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 LBRQ14739 615 aaKnown RBP12.81□□□□□ -0.36
CD44-203ENST00000278386 SMTNL2Q2TAL5 461 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 AFMIDQ63HM1 303 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 DENND2CQ68D51 928 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 KCTD16Q68DU8 428 aa12.81□□□□□ -0.36
CD44-203ENST00000278386 RAB11FIP2Q7L804 512 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms