RNA–Protein interactions for RNA: ENST00000276573.11

TRIM55-201, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 1,960 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-201ENST00000276573 BMPR1AP36894 532 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 CSKP41240 450 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 GLRBP48167 497 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 RASSF2P50749 326 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 FPGSQ05932 587 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 KRT72Q14CN4 511 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 TAF1AQ15573 450 aaPredicted RBP9.63□□□□□ -0.87
TRIM55-201ENST00000276573 TMEM240Q5SV17 173 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 HECTD2Q5U5R9 776 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 CYB5D1Q6P9G0 228 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 LDB1Q86U70 411 aaPredicted RBP9.63□□□□□ -0.87
TRIM55-201ENST00000276573 ALYREFQ86V81 257 aaKnown RBP9.63□□□□□ -0.87
TRIM55-201ENST00000276573 DNAJC5GQ8N7S2 189 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.63□□□□□ -0.87
TRIM55-201ENST00000276573 MRPL43Q8N983 215 aaKnown RBP9.63□□□□□ -0.87
TRIM55-201ENST00000276573 TDRD5Q8NAT2 981 aaKnown RBP9.63□□□□□ -0.87
TRIM55-201ENST00000276573 MDGA1Q8NFP4 955 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 OR4L1Q8NH43 312 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 WFDC5Q8TCV5 224 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 DDI1Q8WTU0 396 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 SLC22A17Q8WUG5 538 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 HEXDCQ8WVB3 486 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 TSPAN17Q96FV3 270 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 PRR11Q96HE9 360 aaPredicted RBP9.63□□□□□ -0.87
TRIM55-201ENST00000276573 TMEM237Q96Q45 408 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 NDNQ99608 321 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 TCF25Q9BQ70 676 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 CORO1BQ9BR76 489 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 TDRD1Q9BXT4 1180 aaKnown RBP9.63□□□□□ -0.87
TRIM55-201ENST00000276573 EMILIN2Q9BXX0 1053 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 SLC46A2Q9BY10 475 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 LRMDAQ9H2I8 198 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 CFAP97Q9P2B7 532 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 LHX3Q9UBR4 397 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 VPS51Q9UID3 782 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 LNPEPQ9UIQ6 1025 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 VPS28Q9UK41 221 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 LZTS1Q9Y250 596 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 SH3BP1Q9Y3L3 701 aa9.63□□□□□ -0.87
TRIM55-201ENST00000276573 ANKRD66B4E2M5 251 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 NRG2O14511 850 aaPredicted RBP9.62□□□□□ -0.87
TRIM55-201ENST00000276573 TRAFD1O14545 582 aaPredicted RBP9.62□□□□□ -0.87
TRIM55-201ENST00000276573 ZNF195O14628 629 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 MGRN1O60291 552 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 DLX3O60479 287 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 HNRNPCL1O60812 293 aaKnown RBP9.62□□□□□ -0.87
TRIM55-201ENST00000276573 CCDC22O60826 627 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 KRT16P08779 473 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 ALOX15P16050 662 aaPredicted RBP9.62□□□□□ -0.87
TRIM55-201ENST00000276573 PFKLP17858 780 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 PTPN4P29074 926 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 LBX1P52954 281 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 CDH18Q13634 790 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 MPPE1Q53F39 396 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 LIPMQ5VYY2 423 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 MRNIPQ6NTE8 343 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 SDCCAG8Q86SQ7 713 aaPredicted RBP9.62□□□□□ -0.87
TRIM55-201ENST00000276573 TTC7BQ86TV6 843 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 BBS7Q8IWZ6 715 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 APCDD1Q8J025 514 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 SPATA6LQ8N4H0 392 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 TTC16Q8NEE8 873 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 SP7Q8TDD2 431 aaPredicted RBP9.62□□□□□ -0.87
TRIM55-201ENST00000276573 PTCD3Q96EY7 689 aaKnown RBP9.62□□□□□ -0.87
TRIM55-201ENST00000276573 RILPQ96NA2 401 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 MRPL57Q9BQC6 102 aaKnown RBP9.62□□□□□ -0.87
TRIM55-201ENST00000276573 EBF4Q9BQW3 602 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 ADGRE3Q9BY15 652 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 NMUR2Q9GZQ4 415 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 FAM96AQ9H5X1 160 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 STN1Q9H668 368 aaKnown RBP9.62□□□□□ -0.87
TRIM55-201ENST00000276573 IGSF5Q9NSI5 407 aa9.62□□□□□ -0.87
TRIM55-201ENST00000276573 OBSL1O75147 1896 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 C2orf81A6NN90 581 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 HIDE1A8MVS5 230 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 LEFTY2O00292 366 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 CCL16O15467 120 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 HSPA4LO95757 839 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 GLUD1P00367 558 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 MT-CO1P00395 513 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 OGNP20774 298 aaKnown RBP9.61□□□□□ -0.87
TRIM55-201ENST00000276573 SLC8A1P32418 973 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 IDH3AP50213 366 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 KPNA2P52292 529 aaKnown RBP9.61□□□□□ -0.87
TRIM55-201ENST00000276573 ZNF140P52738 457 aaPredicted RBP9.61□□□□□ -0.87
TRIM55-201ENST00000276573 CDKN2DP55273 166 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 TRAF2Q12933 501 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 TUBB3Q13509 450 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 SEMA3AQ14563 771 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 FAM83EQ2M2I3 478 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 RALGPS1Q5JS13 557 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 PPM1LQ5SGD2 360 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 MPP7Q5T2T1 576 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 ZNF549Q6P9A3 640 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 MFN1Q8IWA4 741 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 PARP9Q8IXQ6 854 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 DCAF4L2Q8NA75 395 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 LPCAT1Q8NF37 534 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 OR4K2Q8NGD2 314 aa9.61□□□□□ -0.87
TRIM55-201ENST00000276573 FIBINQ8TAL6 211 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms