RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 DNAJB13P59910 316 aa12.99□□□□□ -0.33
SPTLC1-201ENST00000262554 TWF1Q12792 350 aa12.99□□□□□ -0.33
SPTLC1-201ENST00000262554 C1orf53Q5VUE5 145 aa12.99□□□□□ -0.33
SPTLC1-201ENST00000262554 FAM45BPQ6NSW5 357 aa12.99□□□□□ -0.33
SPTLC1-201ENST00000262554 CCNYL1Q8N7R7 359 aa12.99□□□□□ -0.33
SPTLC1-201ENST00000262554 GPR150Q8NGU9 434 aa12.99□□□□□ -0.33
SPTLC1-201ENST00000262554 FAM45AQ8TCE6 357 aa12.99□□□□□ -0.33
SPTLC1-201ENST00000262554 ZNF689Q96CS4 500 aaPredicted RBP12.99□□□□□ -0.33
SPTLC1-201ENST00000262554 CMTM5Q96DZ9 223 aa12.99□□□□□ -0.33
SPTLC1-201ENST00000262554 DNAJC1Q96KC8 554 aaKnown RBP12.99□□□□□ -0.33
SPTLC1-201ENST00000262554 TRIB3Q96RU7 358 aa12.99□□□□□ -0.33
SPTLC1-201ENST00000262554 UNKQ9C0B0 810 aaKnown RBP12.99□□□□□ -0.33
SPTLC1-201ENST00000262554 CRISPLD2Q9H0B8 497 aa12.99□□□□□ -0.33
SPTLC1-201ENST00000262554 MUC3BQ9H195 1237 aa12.99□□□□□ -0.33
SPTLC1-201ENST00000262554 EBF2Q9HAK2 575 aa12.99□□□□□ -0.33
SPTLC1-201ENST00000262554 SCUBE2Q9NQ36 999 aa12.99□□□□□ -0.33
SPTLC1-201ENST00000262554 SPG21Q9NZD8 308 aa12.99□□□□□ -0.33
SPTLC1-201ENST00000262554 MARCH4Q9P2E8 410 aaPredicted RBP12.99□□□□□ -0.33
SPTLC1-201ENST00000262554 CORO1CQ9ULV4 474 aaPredicted RBP12.99□□□□□ -0.33
SPTLC1-201ENST00000262554 ATP11BQ9Y2G3 1177 aa12.99□□□□□ -0.33
SPTLC1-201ENST00000262554 TBC1D30Q9Y2I9 924 aa12.99□□□□□ -0.33
SPTLC1-201ENST00000262554 ARIH1Q9Y4X5 557 aaPredicted RBP12.99□□□□□ -0.33
SPTLC1-201ENST00000262554 CARNS1A5YM72 827 aa12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 ENTPD5O75356 428 aa12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 ANP32DO95626 131 aa12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 GOT2P00505 430 aaKnown RBP12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 MBL2P11226 248 aaPredicted RBP12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 HOXB8P17481 243 aaPredicted RBP12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 SERPINB5P36952 375 aa12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 SLC26A3P40879 764 aa12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 HTRA3P83110 453 aa12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 ACAP2Q15057 778 aa12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 SLC9B1Q4ZJI4 515 aa12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 TECRLQ5HYJ1 363 aa12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 RNF219Q5W0B1 726 aaPredicted RBP12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 FAM117BQ6P1L5 589 aa12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 ZNF783Q6ZMS7 281 aa12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 C16orf59Q7L2K0 433 aa12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 PIWIL4Q7Z3Z4 852 aaKnown RBP12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 DNAJB7Q7Z6W7 309 aaPredicted RBP12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 SDCCAG8Q86SQ7 713 aaPredicted RBP12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 DDX53Q86TM3 631 aaKnown RBP12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 LDB1Q86U70 411 aaPredicted RBP12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 RNF135Q8IUD6 432 aa12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 ENDOVQ8N8Q3 282 aaKnown RBP12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 SGF29Q96ES7 293 aa12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 POMKQ9H5K3 350 aa12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 SUDS3Q9H7L9 328 aaPredicted RBP12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 DCLRE1BQ9H816 532 aa12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 TCF7L2Q9NQB0 619 aa12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 ANKRD36A6QL64 1941 aa12.98□□□□□ -0.33
SPTLC1-201ENST00000262554 CCDC162PA2VCL2 907 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 BUD23O43709 281 aaKnown RBP12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 LATS1O95835 1130 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 PIRTP0C851 137 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 TFEBP19484 476 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 OGNP20774 298 aaKnown RBP12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 CCR10P46092 362 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 RAP1GDS1P52306 607 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 COPAP53621 1224 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 PFKPQ01813 784 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 NSUN2Q08J23 767 aaKnown RBP eCLIP12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 ACAD11Q709F0 780 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 SCUBE1Q8IWY4 988 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 TCEAL8Q8IYN2 117 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 TXNDC5Q8NBS9 432 aaKnown RBP12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 OR4L1Q8NH43 312 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 FBXO27Q8NI29 283 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 MAPK15Q8TD08 544 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 STON2Q8WXE9 905 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 RMDN1Q96DB5 314 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 MOCOSQ96EN8 888 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 CNDP1Q96KN2 507 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 UBXN10Q96LJ8 280 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 FAM161BQ96MY7 647 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 ACSS2Q9NR19 701 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 MAN1C1Q9NR34 630 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 CATSPERZQ9NTU4 200 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 PLA2G4CQ9UP65 541 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 INSL5Q9Y5Q6 135 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 TYW5A2RUC4 315 aaKnown RBP12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 E9PBE3 544 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 KLHL41O60662 606 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 CIB2O75838 187 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 TM7SF2O76062 418 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 C1RP00736 705 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 CR2P20023 1033 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 PRDX6P30041 224 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 RGRP47804 291 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 GTF2A1P52655 376 aaPredicted RBP12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 CDKN2DP55273 166 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 SMAD3P84022 425 aaKnown RBP12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 KPNB1Q14974 876 aaKnown RBP12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 CYTH1Q15438 398 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 C6orf163Q5TEZ5 329 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 CXorf57Q6NSI4 855 aaKnown RBP12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 TRIM67Q6ZTA4 783 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 CMTR2Q8IYT2 770 aaKnown RBP12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 LSMEM2Q8N112 164 aa12.97□□□□□ -0.33
SPTLC1-201ENST00000262554 OR13C4Q8NGS5 318 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms