RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 PRKCGP05129 697 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 PDHA1P08559 390 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 GNSP15586 552 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 MMP12P39900 470 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 RPS21P63220 83 aaKnown RBP16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 CSRP2Q16527 193 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 SETMARQ53H47 684 aaPredicted RBP16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 ERAP2Q6P179 960 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 PID1Q7Z2X4 250 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 RABEPKQ7Z6M1 372 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 CEP76Q8TAP6 659 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 ATG4AQ8WYN0 398 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 TADA1Q96BN2 335 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 RBM15Q96T37 977 aaKnown RBP eCLIP16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 FERMT1Q9BQL6 677 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 TRHDEQ9UKU6 1024 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 DNPEPQ9ULA0 475 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 PHTF1Q9UMS5 762 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 ZNF292O60281 2723 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 PLXNA2O75051 1894 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 A0A1B0GTW7 788 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 ZNF189O75820 626 aaPredicted RBP16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 PRLP01236 227 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 NFKB1P19838 968 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 NUDT1P36639 197 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 FAM193AP78312 1265 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 SIX1Q15475 284 aaPredicted RBP16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 DUOXA1Q1HG43 343 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 TMEM52BQ4KMG9 183 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 TRIM61Q5EBN2 209 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 TCEAL6Q6IPX3 200 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 SLC23A3Q6PIS1 610 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 ZSCAN30Q86W11 494 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 SPATA22Q8NHS9 363 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 PIH1D2Q8WWB5 315 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 KLK6Q92876 244 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 TCEAL3Q969E4 200 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 PBKQ96KB5 322 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 C1QTNF2Q9BXJ5 285 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 SLC17A9Q9BYT1 436 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 FRMD8P1Q9BZ68 369 aaPredicted RBP16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 TM9SF3Q9HD45 589 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 DMTF1Q9Y222 760 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 CHKBQ9Y259 395 aa16.65■□□□□ 0.26
CCDC28A-202ENST00000611852 IGLON5A6NGN9 336 aa16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 KHNYNO15037 678 aaKnown RBP16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 SLC31A1O15431 190 aa16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 LIASO43766 372 aa16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 MT-CYBP00156 380 aaPredicted RBP16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 PRLRP16471 622 aa16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 CA4P22748 312 aa16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 GNG11P61952 73 aa16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 RACK1P63244 317 aaKnown RBP16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 SEMG2Q02383 582 aa16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 RALGDSQ12967 914 aa16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 FGL2Q14314 439 aa16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 SF3A2Q15428 464 aaKnown RBP16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 SLC14A2Q15849 920 aa16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 C17orf53Q8N3J3 647 aaPredicted RBP16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 GPR161Q8N6U8 529 aaKnown RBP16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 CXorf40AQ8TE69 158 aa16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 C1orf54Q8WWF1 131 aa16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 SERAC1Q96JX3 654 aa16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 SLC6A18Q96N87 628 aa16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 WDR24Q96S15 920 aa16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 WRAP53Q9BUR4 548 aaKnown RBP16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 PCDH9Q9HC56 1237 aa16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 CAPN10Q9HC96 672 aa16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 PPIL1Q9Y3C6 166 aa16.64■□□□□ 0.25
CCDC28A-202ENST00000611852 CACNA1EQ15878 2313 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 PRR5-ARHGAP8B1AHC4 643 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 WNT9AO14904 365 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 MMP20O60882 483 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 STK10O94804 968 aaKnown RBP16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 PAK4O96013 591 aaPredicted RBP16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 CFIP05156 583 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 AFF3P51826 1226 aaKnown RBP16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 IRX4P78413 519 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 OASLQ15646 514 aaKnown RBP16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 LONRF2Q1L5Z9 754 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 ANKRD20A2Q5SQ80 823 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 ANKRD20A1Q5TYW2 823 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 ANKRD20A3Q5VUR7 823 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 NAPEPLDQ6IQ20 393 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 PRR23CQ6ZRP0 262 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 DPPA4Q7L190 304 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 RASGEF1CQ8N431 466 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 FAM71DQ8N9W8 422 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 MAIP1Q8WWC4 291 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 SCRN2Q96FV2 425 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 SPATA13Q96N96 652 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 FCRL5Q96RD9 977 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 MCCC1Q96RQ3 725 aaPredicted RBP16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 OSBPL9Q96SU4 736 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 TMEM121Q9BTD3 319 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 UBP1Q9NZI7 540 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 B4GALT6Q9UBX8 382 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 RSPH14Q9UHP6 348 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 SNX12Q9UMY4 172 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 SLC6A14Q9UN76 642 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms