RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 USP30Q70CQ3 517 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 B4GALNT4Q76KP1 1039 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 MMAAQ8IVH4 418 aaKnown RBP10.18□□□□□ -0.78
UPF1-213ENST00000601981 TP53INP2Q8IXH6 220 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 MCUQ8NE86 351 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 OR2A12Q8NGT7 310 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 OR2W6PQ8NHA6 318 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 PIP4K2CQ8TBX8 421 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 CCDC110Q8TBZ0 833 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 GRIN3AQ8TCU5 1115 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 MAML1Q92585 1016 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 ARL8AQ96BM9 186 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 ERLEC1Q96DZ1 483 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 ATP6V1G3Q96LB4 118 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 PWWP2AQ96N64 755 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 TUBGCP5Q96RT8 1024 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 VAT1Q99536 393 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 LGMNQ99538 433 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 OMDQ99983 421 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 TPSD1Q9BZJ3 242 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 ROPN1BQ9BZX4 212 aaPredicted RBP10.18□□□□□ -0.78
UPF1-213ENST00000601981 MKRN2Q9H000 416 aaKnown RBP10.18□□□□□ -0.78
UPF1-213ENST00000601981 MTG2Q9H4K7 406 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 ATP13A3Q9H7F0 1226 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 ROPN1Q9HAT0 212 aaPredicted RBP10.18□□□□□ -0.78
UPF1-213ENST00000601981 CD248Q9HCU0 757 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 SAYSD1Q9NPB0 183 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 SCUBE2Q9NQ36 999 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 RAB6BQ9NRW1 208 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 RBM22Q9NW64 420 aaKnown RBP eCLIP10.18□□□□□ -0.78
UPF1-213ENST00000601981 C2orf42Q9NWW7 574 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 GOLGA6AQ9NYA3 693 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 SEPT10Q9P0V9 454 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 VPS18Q9P253 973 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 LHX3Q9UBR4 397 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 TTLL3Q9Y4R7 772 aa10.18□□□□□ -0.78
UPF1-213ENST00000601981 A0A1W2PQ67 120 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 TCRBV7S3A2A0A539 114 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 RNF103O00237 685 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 KPNA3O00505 521 aaPredicted RBP10.17□□□□□ -0.78
UPF1-213ENST00000601981 MAP3K13O43283 966 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 LEFTY1O75610 366 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 TCEA3O75764 348 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 RPP40O75818 363 aaKnown RBP10.17□□□□□ -0.78
UPF1-213ENST00000601981 ACSL3O95573 720 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 SHBGP04278 402 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 IVLP07476 585 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 TDGF1P13385 188 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 XPAP23025 273 aaPredicted RBP10.17□□□□□ -0.78
UPF1-213ENST00000601981 SERPINA4P29622 427 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 SLC8A1P32418 973 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 PXNP49023 591 aaPredicted RBP10.17□□□□□ -0.78
UPF1-213ENST00000601981 SCNN1BP51168 640 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 RPS14P62263 151 aaKnown RBP10.17□□□□□ -0.78
UPF1-213ENST00000601981 IFI35P80217 286 aaPredicted RBP10.17□□□□□ -0.78
UPF1-213ENST00000601981 CDK16Q00536 496 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 KYNUQ16719 465 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 MYLK3Q32MK0 819 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 ANKRD20A2Q5SQ80 823 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 ATXN7L2Q5T6C5 722 aaPredicted RBP10.17□□□□□ -0.78
UPF1-213ENST00000601981 ANKRD20A1Q5TYW2 823 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 ANKRD20A3Q5VUR7 823 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 SLC36A4Q6YBV0 504 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 CEP68Q76N32 757 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 SRLQ86TD4 932 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 CACUL1Q86Y37 369 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 MAML2Q8IZL2 1156 aaPredicted RBP10.17□□□□□ -0.78
UPF1-213ENST00000601981 PDIK1LQ8N165 341 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 TEX26Q8N6G2 289 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 FAM76AQ8TAV0 307 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 PGM2Q96G03 612 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 EXOC2Q96KP1 924 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 PPP1R2P1Q96PQ5 205 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 NUDCD1Q96RS6 583 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 FAM129BQ96TA1 746 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 MGME1Q9BQP7 344 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 CPEB1Q9BZB8 566 aaKnown RBP10.17□□□□□ -0.78
UPF1-213ENST00000601981 NT5MQ9NPB1 228 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 EIF2B3Q9NR50 452 aaKnown RBP10.17□□□□□ -0.78
UPF1-213ENST00000601981 POLR3BQ9NW08 1133 aaPredicted RBP10.17□□□□□ -0.78
UPF1-213ENST00000601981 RAB23Q9ULC3 237 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 PPM1HQ9ULR3 514 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 FZD4Q9ULV1 537 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 ACTL7AQ9Y615 435 aa10.17□□□□□ -0.78
UPF1-213ENST00000601981 CACNA1HO95180 2353 aa10.16□□□□□ -0.78
UPF1-213ENST00000601981 RALGAPA1Q6GYQ0 2036 aa10.16□□□□□ -0.78
UPF1-213ENST00000601981 A0A087WUV0 522 aaPredicted RBP10.16□□□□□ -0.78
UPF1-213ENST00000601981 H0Y858 1186 aa10.16□□□□□ -0.78
UPF1-213ENST00000601981 GOLGA8MH3BSY2 632 aa10.16□□□□□ -0.78
UPF1-213ENST00000601981 KCNK1O00180 336 aa10.16□□□□□ -0.78
UPF1-213ENST00000601981 MID1O15344 667 aa10.16□□□□□ -0.78
UPF1-213ENST00000601981 SLC7A4O43246 635 aa10.16□□□□□ -0.78
UPF1-213ENST00000601981 NDUFS2O75306 463 aa10.16□□□□□ -0.78
UPF1-213ENST00000601981 ZNF821O75541 412 aaPredicted RBP10.16□□□□□ -0.78
UPF1-213ENST00000601981 RNASEH2AO75792 299 aaKnown RBP10.16□□□□□ -0.78
UPF1-213ENST00000601981 PEX11BO96011 259 aa10.16□□□□□ -0.78
UPF1-213ENST00000601981 JCHAINP01591 159 aa10.16□□□□□ -0.78
UPF1-213ENST00000601981 UGT2B4P06133 528 aa10.16□□□□□ -0.78
UPF1-213ENST00000601981 SERPINF2P08697 491 aa10.16□□□□□ -0.78
UPF1-213ENST00000601981 C7P10643 843 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms