RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 PLK1P53350 603 aa11.8□□□□□ -0.52
VRK3-223ENST00000601341 LMAN2Q12907 356 aa11.8□□□□□ -0.52
VRK3-223ENST00000601341 PDGFRLQ15198 375 aa11.8□□□□□ -0.52
VRK3-223ENST00000601341 DHCR24Q15392 516 aa11.8□□□□□ -0.52
VRK3-223ENST00000601341 INSCQ1MX18 579 aa11.8□□□□□ -0.52
VRK3-223ENST00000601341 EML3Q32P44 896 aa11.8□□□□□ -0.52
VRK3-223ENST00000601341 TANGO2Q6ICL3 276 aa11.8□□□□□ -0.52
VRK3-223ENST00000601341 RETSATQ6NUM9 610 aa11.8□□□□□ -0.52
VRK3-223ENST00000601341 ARHGAP24Q8N264 748 aa11.8□□□□□ -0.52
VRK3-223ENST00000601341 ATP2A3Q93084 1043 aa11.8□□□□□ -0.52
VRK3-223ENST00000601341 PTCD3Q96EY7 689 aaKnown RBP11.8□□□□□ -0.52
VRK3-223ENST00000601341 LRCH3Q96II8 777 aa11.8□□□□□ -0.52
VRK3-223ENST00000601341 NSL1Q96IY1 281 aa11.8□□□□□ -0.52
VRK3-223ENST00000601341 MYCBPQ99417 103 aaPredicted RBP11.8□□□□□ -0.52
VRK3-223ENST00000601341 SLC25A51Q9H1U9 297 aa11.8□□□□□ -0.52
VRK3-223ENST00000601341 POMKQ9H5K3 350 aa11.8□□□□□ -0.52
VRK3-223ENST00000601341 SEPT3Q9UH03 358 aa11.8□□□□□ -0.52
VRK3-223ENST00000601341 CLEC4EQ9ULY5 219 aa11.8□□□□□ -0.52
VRK3-223ENST00000601341 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.8□□□□□ -0.52
VRK3-223ENST00000601341 SZT2Q5T011 3432 aa11.8□□□□□ -0.52
VRK3-223ENST00000601341 C2orf16Q68DN1 1984 aa11.8□□□□□ -0.52
VRK3-223ENST00000601341 CXorf49A8MYA2 514 aaPredicted RBP11.79□□□□□ -0.52
VRK3-223ENST00000601341 AP3B1O00203 1094 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 SNNO75324 88 aaPredicted RBP11.79□□□□□ -0.52
VRK3-223ENST00000601341 AP2A1O95782 977 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 NEFHP12036 1026 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 GLDCP23378 1020 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 CD70P32970 193 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 NUMBP49757 651 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 OCRLQ01968 901 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 ITKQ08881 620 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 NIPAL4Q0D2K0 466 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 PLEKHG6Q3KR16 790 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 INO80DQ53TQ3 878 aaPredicted RBP11.79□□□□□ -0.52
VRK3-223ENST00000601341 PRPF38BQ5VTL8 546 aaKnown RBP11.79□□□□□ -0.52
VRK3-223ENST00000601341 MFSD6LQ8IWD5 586 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 KLHDC8BQ8IXV7 354 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 FAM13CQ8NE31 585 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 RFWD2Q8NHY2 731 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 OXNAD1Q96HP4 312 aaPredicted RBP11.79□□□□□ -0.52
VRK3-223ENST00000601341 PSKH2Q96QS6 385 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 GORASP1Q9BQQ3 440 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 BTBD10Q9BSF8 475 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 POLR1EQ9GZS1 481 aaKnown RBP11.79□□□□□ -0.52
VRK3-223ENST00000601341 WWP1Q9H0M0 922 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 LRRC40Q9H9A6 602 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 ABCB8Q9NUT2 735 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 HEY2Q9UBP5 337 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 VPS51Q9UID3 782 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 CD207Q9UJ71 328 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 TRIM33Q9UPN9 1127 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 A0A0G2JND7 137 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 CXorf51AA0A1B0GTR3 108 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 HOXC11O43248 304 aaPredicted RBP11.79□□□□□ -0.52
VRK3-223ENST00000601341 SNAP91O60641 907 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 CYP17A1P05093 508 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 ADH5P11766 374 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 PGAM1P18669 254 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 BGNP21810 368 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 HLA-FP30511 346 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 GCKP35557 465 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 GEMP55040 296 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 ARF5P84085 180 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 FCHO2Q0JRZ9 810 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 DMC1Q14565 340 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 E2F5Q15329 346 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 KCTD11Q693B1 232 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 TRIM68Q6AZZ1 485 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 VITQ6UXI7 678 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 YAF2Q8IY57 180 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 APCDD1Q8J025 514 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.79□□□□□ -0.52
VRK3-223ENST00000601341 ELSPBP1Q96BH3 223 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 IMP4Q96G21 291 aaKnown RBP11.79□□□□□ -0.52
VRK3-223ENST00000601341 LMLNQ96KR4 655 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 KLF6Q99612 283 aaPredicted RBP11.79□□□□□ -0.52
VRK3-223ENST00000601341 FAM83CQ9BQN1 747 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 MLPHQ9BV36 600 aaPredicted RBP11.79□□□□□ -0.52
VRK3-223ENST00000601341 CINPQ9BW66 212 aaPredicted RBP11.79□□□□□ -0.52
VRK3-223ENST00000601341 TMEM120AQ9BXJ8 343 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 DCLRE1BQ9H816 532 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 SMYD2Q9NRG4 433 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 VPS45Q9NRW7 570 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 THAP1Q9NVV9 213 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 DCDC2Q9UHG0 476 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 MAD1L1Q9Y6D9 718 aa11.79□□□□□ -0.52
VRK3-223ENST00000601341 NYNRINQ9P2P1 1898 aaKnown RBP11.78□□□□□ -0.52
VRK3-223ENST00000601341 WDR91A4D1P6 747 aa11.78□□□□□ -0.52
VRK3-223ENST00000601341 GLRA3O75311 464 aa11.78□□□□□ -0.52
VRK3-223ENST00000601341 BPGMP07738 259 aa11.78□□□□□ -0.52
VRK3-223ENST00000601341 PABPC1P11940 636 aaKnown RBP11.78□□□□□ -0.52
VRK3-223ENST00000601341 PSMC3P17980 439 aa11.78□□□□□ -0.52
VRK3-223ENST00000601341 CES1P23141 567 aa11.78□□□□□ -0.52
VRK3-223ENST00000601341 MAXP61244 160 aa11.78□□□□□ -0.52
VRK3-223ENST00000601341 ZBTB16Q05516 673 aa11.78□□□□□ -0.52
VRK3-223ENST00000601341 MPP3Q13368 585 aa11.78□□□□□ -0.52
VRK3-223ENST00000601341 PITRM1Q5JRX3 1037 aa11.78□□□□□ -0.52
VRK3-223ENST00000601341 ALG1LQ6GMV1 187 aa11.78□□□□□ -0.52
VRK3-223ENST00000601341 NAPEPLDQ6IQ20 393 aa11.78□□□□□ -0.52
VRK3-223ENST00000601341 LINGO4Q6UY18 593 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms