RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 PRKCQQ04759 706 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 CCDC15Q0P6D6 951 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 MESP2Q0VG99 397 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 SEPT6Q14141 434 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 GALNT3Q14435 633 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 STARD3Q14849 445 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 PON2Q15165 354 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 TAF1AQ15573 450 aaPredicted RBP15.34■□□□□ 0.05
TRIM28-209ENST00000597423 UAP1Q16222 522 aaPredicted RBP15.34■□□□□ 0.05
TRIM28-209ENST00000597423 QPCTQ16769 361 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 ANKRD20A4Q4UJ75 823 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 ZNF805Q5CZA5 627 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 C9orf64Q5T6V5 341 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 FAM46CQ5VWP2 391 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 STEAP4Q687X5 459 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 ZNF852Q6ZMS4 543 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 TMEM135Q86UB9 458 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 IGDCC3Q8IVU1 814 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 MPP5Q8N3R9 675 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 BLOC1S5Q8TDH9 187 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 CDKL2Q92772 493 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 PPP1R16AQ96I34 528 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 CYTH2Q99418 400 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 FBRSQ9HAH7 460 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 DYRK4Q9NR20 520 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 ZNF446Q9NWS9 450 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.34■□□□□ 0.05
TRIM28-209ENST00000597423 DKK3Q9UBP4 350 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 RIMKLBQ9ULI2 386 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 SORCS3Q9UPU3 1222 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 TCAF1Q9Y4C2 921 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 IKBKGQ9Y6K9 419 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 FAM169AQ9Y6X4 670 aa15.34■□□□□ 0.05
TRIM28-209ENST00000597423 BRWD1Q9NSI6 2320 aa15.33■□□□□ 0.05
TRIM28-209ENST00000597423 MYO18AQ92614 2054 aaKnown RBP15.33■□□□□ 0.04
TRIM28-209ENST00000597423 NARSO43776 548 aaKnown RBP15.33■□□□□ 0.04
TRIM28-209ENST00000597423 SIN3BO75182 1162 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 LEFTY1O75610 366 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 PIGNO95427 931 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 UGT2B4P06133 528 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 PDHA1P08559 390 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 SSTR1P30872 391 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 NTSR1P30989 418 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 GKP32189 559 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 TIE1P35590 1138 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 IL12RB1P42701 662 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 GPX6P59796 221 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 ZP2Q05996 745 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 ENPP2Q13822 863 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 EGFLAMQ63HQ2 1017 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 NAIF1Q69YI7 327 aaPredicted RBP15.33■□□□□ 0.04
TRIM28-209ENST00000597423 TXNDC11Q6PKC3 985 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 UNC5AQ6ZN44 842 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 USP45Q70EL2 814 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.33■□□□□ 0.04
TRIM28-209ENST00000597423 CHST14Q8NCH0 376 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 FBF1Q8TES7 1133 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 PIH1D2Q8WWB5 315 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 ATXN2LQ8WWM7 1075 aaKnown RBP15.33■□□□□ 0.04
TRIM28-209ENST00000597423 ECHDC3Q96DC8 303 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 KLHL32Q96NJ5 620 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 NELL2Q99435 816 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 TMEM109Q9BVC6 243 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 CHRAC1Q9NRG0 131 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 WNT16Q9UBV4 365 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 FETUBQ9UGM5 382 aa15.33■□□□□ 0.04
TRIM28-209ENST00000597423 KIF26AQ9ULI4 1882 aaPredicted RBP15.33■□□□□ 0.04
TRIM28-209ENST00000597423 TCEA3O75764 348 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 ALDH1A2O94788 518 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 EGFP01133 1207 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 CYP2A6P11509 494 aaPredicted RBP15.32■□□□□ 0.04
TRIM28-209ENST00000597423 ABL2P42684 1182 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 KIR2DL1P43626 348 aaPredicted RBP15.32■□□□□ 0.04
TRIM28-209ENST00000597423 SEC13P55735 322 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 FAM193AP78312 1265 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 SFSWAPQ12872 951 aaKnown RBP15.32■□□□□ 0.04
TRIM28-209ENST00000597423 CRYMQ14894 314 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 MLF2Q15773 248 aaPredicted RBP15.32■□□□□ 0.04
TRIM28-209ENST00000597423 LONRF1Q17RB8 773 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 HSP90B2PQ58FF3 399 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 TSTD2Q5T7W7 516 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 LGSNQ5TDP6 509 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 EMC10Q5UCC4 262 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 FSTL4Q6MZW2 842 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 CAPN12Q6ZSI9 719 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 TPRG1Q6ZUI0 275 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 UBALD2Q8IYN6 164 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 STK40Q8N2I9 435 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 AGGF1Q8N302 714 aaeCLIP15.32■□□□□ 0.04
TRIM28-209ENST00000597423 GRIN3AQ8TCU5 1115 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 STYXQ8WUJ0 223 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 ZNF669Q96BR6 464 aaPredicted RBP15.32■□□□□ 0.04
TRIM28-209ENST00000597423 SCRN2Q96FV2 425 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 NSMCE3Q96MG7 304 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 ZIM3Q96PE6 472 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 C19orf43Q9BQ61 176 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 GPR63Q9BZJ6 419 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 EPB41L4BQ9H329 900 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 ACSS3Q9H6R3 686 aa15.32■□□□□ 0.04
TRIM28-209ENST00000597423 PPANQ9NQ55 473 aaKnown RBP15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms