RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 SSTR1P30872 391 aa14.75□□□□□ -0.05
VRK3-212ENST00000596814 PHBP35232 272 aa14.75□□□□□ -0.05
VRK3-212ENST00000596814 WASP42768 502 aa14.75□□□□□ -0.05
VRK3-212ENST00000596814 GPX6P59796 221 aa14.75□□□□□ -0.05
VRK3-212ENST00000596814 SLC29A2Q14542 456 aa14.75□□□□□ -0.05
VRK3-212ENST00000596814 C2orf27AQ580R0 203 aa14.75□□□□□ -0.05
VRK3-212ENST00000596814 ARSIQ5FYB1 569 aa14.75□□□□□ -0.05
VRK3-212ENST00000596814 ARMC3Q5W041 872 aa14.75□□□□□ -0.05
VRK3-212ENST00000596814 UNC5AQ6ZN44 842 aa14.75□□□□□ -0.05
VRK3-212ENST00000596814 TRMT11Q7Z4G4 463 aaKnown RBP14.75□□□□□ -0.05
VRK3-212ENST00000596814 BLOC1S5Q8TDH9 187 aa14.75□□□□□ -0.05
VRK3-212ENST00000596814 PIH1D2Q8WWB5 315 aa14.75□□□□□ -0.05
VRK3-212ENST00000596814 KLHL32Q96NJ5 620 aa14.75□□□□□ -0.05
VRK3-212ENST00000596814 RANBP9Q96S59 729 aa14.75□□□□□ -0.05
VRK3-212ENST00000596814 TRIM56Q9BRZ2 755 aaKnown RBP14.75□□□□□ -0.05
VRK3-212ENST00000596814 FUT8Q9BYC5 575 aa14.75□□□□□ -0.05
VRK3-212ENST00000596814 MRM3Q9HC36 420 aaKnown RBP14.75□□□□□ -0.05
VRK3-212ENST00000596814 ARHGEF3Q9NR81 526 aa14.75□□□□□ -0.05
VRK3-212ENST00000596814 CA14Q9ULX7 337 aa14.75□□□□□ -0.05
VRK3-212ENST00000596814 FAM237BA0A1B0GVD1 139 aa14.74□□□□□ -0.05
VRK3-212ENST00000596814 HEATR9A2RTY3 570 aa14.74□□□□□ -0.05
VRK3-212ENST00000596814 PRKCGP05129 697 aa14.74□□□□□ -0.05
VRK3-212ENST00000596814 GSTA2P09210 222 aa14.74□□□□□ -0.05
VRK3-212ENST00000596814 PIRTP0C851 137 aa14.74□□□□□ -0.05
VRK3-212ENST00000596814 BMP1P13497 986 aa14.74□□□□□ -0.05
VRK3-212ENST00000596814 ADRA1DP25100 572 aa14.74□□□□□ -0.05
VRK3-212ENST00000596814 NTSR1P30989 418 aa14.74□□□□□ -0.05
VRK3-212ENST00000596814 PRKCQQ04759 706 aa14.74□□□□□ -0.05
VRK3-212ENST00000596814 MSLNQ13421 630 aaPredicted RBP14.74□□□□□ -0.05
VRK3-212ENST00000596814 FBXO43Q4G163 708 aa14.74□□□□□ -0.05
VRK3-212ENST00000596814 STEAP4Q687X5 459 aa14.74□□□□□ -0.05
VRK3-212ENST00000596814 SDE2Q6IQ49 451 aa14.74□□□□□ -0.05
VRK3-212ENST00000596814 PKN3Q6P5Z2 889 aa14.74□□□□□ -0.05
VRK3-212ENST00000596814 C3orf62Q6ZUJ4 267 aa14.74□□□□□ -0.05
VRK3-212ENST00000596814 DSG4Q86SJ6 1040 aa14.74□□□□□ -0.05
VRK3-212ENST00000596814 ZSWIM9Q86XI8 627 aa14.74□□□□□ -0.05
VRK3-212ENST00000596814 ATXN2LQ8WWM7 1075 aaKnown RBP14.74□□□□□ -0.05
VRK3-212ENST00000596814 ZNF669Q96BR6 464 aaPredicted RBP14.74□□□□□ -0.05
VRK3-212ENST00000596814 KIFC1Q9BW19 673 aa14.74□□□□□ -0.05
VRK3-212ENST00000596814 PRSS16Q9NQE7 514 aa14.74□□□□□ -0.05
VRK3-212ENST00000596814 RPS6KL1Q9Y6S9 549 aa14.74□□□□□ -0.05
VRK3-212ENST00000596814 A0A087WUV0 522 aaPredicted RBP14.73□□□□□ -0.05
VRK3-212ENST00000596814 USP1O94782 785 aa14.73□□□□□ -0.05
VRK3-212ENST00000596814 POLBP06746 335 aa14.73□□□□□ -0.05
VRK3-212ENST00000596814 NUDT17P0C025 328 aa14.73□□□□□ -0.05
VRK3-212ENST00000596814 SLC8A1P32418 973 aa14.73□□□□□ -0.05
VRK3-212ENST00000596814 MRPS21P82921 87 aaKnown RBP14.73□□□□□ -0.05
VRK3-212ENST00000596814 LAMB3Q13751 1172 aa14.73□□□□□ -0.05
VRK3-212ENST00000596814 CCINQ13939 588 aa14.73□□□□□ -0.05
VRK3-212ENST00000596814 CRYMQ14894 314 aa14.73□□□□□ -0.05
VRK3-212ENST00000596814 SPANXN3Q5MJ09 141 aa14.73□□□□□ -0.05
VRK3-212ENST00000596814 BRAT1Q6PJG6 821 aa14.73□□□□□ -0.05
VRK3-212ENST00000596814 ZNF852Q6ZMS4 543 aa14.73□□□□□ -0.05
VRK3-212ENST00000596814 GLT6D1Q7Z4J2 308 aa14.73□□□□□ -0.05
VRK3-212ENST00000596814 IL17RCQ8NAC3 791 aa14.73□□□□□ -0.05
VRK3-212ENST00000596814 UHMK1Q8TAS1 419 aaKnown RBP14.73□□□□□ -0.05
VRK3-212ENST00000596814 GSDMBQ8TAX9 411 aa14.73□□□□□ -0.05
VRK3-212ENST00000596814 BRSK1Q8TDC3 778 aa14.73□□□□□ -0.05
VRK3-212ENST00000596814 SPOCK2Q92563 424 aa14.73□□□□□ -0.05
VRK3-212ENST00000596814 VIPAS39Q9H9C1 493 aa14.73□□□□□ -0.05
VRK3-212ENST00000596814 PLAC1Q9HBJ0 212 aa14.73□□□□□ -0.05
VRK3-212ENST00000596814 CHRAC1Q9NRG0 131 aa14.73□□□□□ -0.05
VRK3-212ENST00000596814 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.73□□□□□ -0.05
VRK3-212ENST00000596814 PHTF1Q9UMS5 762 aa14.73□□□□□ -0.05
VRK3-212ENST00000596814 NDRG2Q9UN36 371 aaKnown RBP14.73□□□□□ -0.05
VRK3-212ENST00000596814 PLAAQ9Y263 795 aa14.73□□□□□ -0.05
VRK3-212ENST00000596814 SPO11Q9Y5K1 396 aa14.73□□□□□ -0.05
VRK3-212ENST00000596814 COL6A3P12111 3177 aa14.73□□□□□ -0.05
VRK3-212ENST00000596814 A0A0J9YYE9 177 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 TSPAN11A1L157 253 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 CCDC78A2IDD5 438 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 CAPN8A6NHC0 703 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 SYNCRIPO60506 623 aaKnown RBP14.72□□□□□ -0.05
VRK3-212ENST00000596814 RNF40O75150 1001 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 KLF8O95600 359 aaPredicted RBP14.72□□□□□ -0.05
VRK3-212ENST00000596814 TRBC1P01850 177 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 CTPS1P17812 591 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 CD72P21854 359 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 CAMK2GQ13555 558 aaPredicted RBP14.72□□□□□ -0.05
VRK3-212ENST00000596814 ZNF805Q5CZA5 627 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 CES3Q6UWW8 571 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 USP45Q70EL2 814 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 TMEM135Q86UB9 458 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 NDUFAF2Q8N183 169 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 TMIEQ8NEW7 156 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 PIP4K2CQ8TBX8 421 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 SMIM14Q96QK8 99 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 FAM129BQ96TA1 746 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 GABRG3Q99928 467 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 HACD3Q9P035 362 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 DKK3Q9UBP4 350 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 FBXL21Q9UKT6 434 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 PPM1HQ9ULR3 514 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 TCRBV9S1A1TA0A576 114 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 C1QTNF3-AMACRE9PGA6 284 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 KPNA3O00505 521 aaPredicted RBP14.72□□□□□ -0.05
VRK3-212ENST00000596814 MAP2K7O14733 419 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 SASH3O75995 380 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 CRTAMO95727 393 aa14.72□□□□□ -0.05
VRK3-212ENST00000596814 IL1BP01584 269 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms