RNA–Protein interactions for RNA: ENST00000580073.1

TRAF4-214, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 449 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-214ENST00000580073 HCAR2Q8TDS4 363 aa13.52□□□□□ -0.25
TRAF4-214ENST00000580073 ATXN7L3BQ96GX2 97 aa13.52□□□□□ -0.25
TRAF4-214ENST00000580073 LIN37Q96GY3 246 aaPredicted RBP13.52□□□□□ -0.25
TRAF4-214ENST00000580073 KLHL32Q96NJ5 620 aa13.52□□□□□ -0.25
TRAF4-214ENST00000580073 EPAS1Q99814 870 aa13.52□□□□□ -0.25
TRAF4-214ENST00000580073 LRRC61Q9BV99 259 aa13.52□□□□□ -0.25
TRAF4-214ENST00000580073 SELENOOQ9BVL4 669 aa13.52□□□□□ -0.25
TRAF4-214ENST00000580073 ISCUQ9H1K1 167 aa13.52□□□□□ -0.25
TRAF4-214ENST00000580073 CATSPERBQ9H7T0 1116 aa13.52□□□□□ -0.25
TRAF4-214ENST00000580073 CPNE5Q9HCH3 593 aa13.52□□□□□ -0.25
TRAF4-214ENST00000580073 ADAM22Q9P0K1 906 aa13.52□□□□□ -0.25
TRAF4-214ENST00000580073 ITM2BQ9Y287 266 aa13.52□□□□□ -0.25
TRAF4-214ENST00000580073 HELZ2Q9BYK8 2649 aaKnown RBP13.52□□□□□ -0.25
TRAF4-214ENST00000580073 C2CD4BA6NLJ0 364 aa13.51□□□□□ -0.25
TRAF4-214ENST00000580073 CDRT15L2A8MXV6 281 aa13.51□□□□□ -0.25
TRAF4-214ENST00000580073 AREL1O15033 823 aa13.51□□□□□ -0.25
TRAF4-214ENST00000580073 FGF10O15520 208 aaPredicted RBP13.51□□□□□ -0.25
TRAF4-214ENST00000580073 ATMINO43313 823 aaPredicted RBP13.51□□□□□ -0.25
TRAF4-214ENST00000580073 BUB1O43683 1085 aa13.51□□□□□ -0.25
TRAF4-214ENST00000580073 RASGRP1O95267 797 aa13.51□□□□□ -0.25
TRAF4-214ENST00000580073 FTLP02792 175 aaPredicted RBP13.51□□□□□ -0.25
TRAF4-214ENST00000580073 CALB1P05937 261 aa13.51□□□□□ -0.25
TRAF4-214ENST00000580073 HTR7P34969 479 aa13.51□□□□□ -0.25
TRAF4-214ENST00000580073 YBEYP58557 167 aaPredicted RBP13.51□□□□□ -0.25
TRAF4-214ENST00000580073 EIF2B5Q13144 721 aaKnown RBP13.51□□□□□ -0.25
TRAF4-214ENST00000580073 PARP15Q460N3 678 aa13.51□□□□□ -0.25
TRAF4-214ENST00000580073 PPP1R15BQ5SWA1 713 aa13.51□□□□□ -0.25
TRAF4-214ENST00000580073 ERAP2Q6P179 960 aa13.51□□□□□ -0.25
TRAF4-214ENST00000580073 CCDC81Q6ZN84 652 aa13.51□□□□□ -0.25
TRAF4-214ENST00000580073 SLC35F3Q8IY50 421 aa13.51□□□□□ -0.25
TRAF4-214ENST00000580073 RBFAQ8N0V3 343 aa13.51□□□□□ -0.25
TRAF4-214ENST00000580073 EMC1Q8N766 993 aa13.51□□□□□ -0.25
TRAF4-214ENST00000580073 RTL3Q8N8U3 475 aaKnown RBP13.51□□□□□ -0.25
TRAF4-214ENST00000580073 SPC24Q8NBT2 197 aa13.51□□□□□ -0.25
TRAF4-214ENST00000580073 FAM172AQ8WUF8 416 aa13.51□□□□□ -0.25
TRAF4-214ENST00000580073 RXFP2Q8WXD0 754 aa13.51□□□□□ -0.25
TRAF4-214ENST00000580073 CENPTQ96BT3 561 aa13.51□□□□□ -0.25
TRAF4-214ENST00000580073 CCDC3Q9BQI4 270 aa13.51□□□□□ -0.25
TRAF4-214ENST00000580073 GRPEL1Q9HAV7 217 aa13.51□□□□□ -0.25
TRAF4-214ENST00000580073 PADI4Q9UM07 663 aa13.51□□□□□ -0.25
TRAF4-214ENST00000580073 MFHAS1Q9Y4C4 1052 aa13.51□□□□□ -0.25
TRAF4-214ENST00000580073 BZW2Q9Y6E2 419 aaKnown RBP13.51□□□□□ -0.25
TRAF4-214ENST00000580073 UNC13CQ8NB66 2214 aa13.51□□□□□ -0.25
TRAF4-214ENST00000580073 RNF103O00237 685 aa13.5□□□□□ -0.25
TRAF4-214ENST00000580073 SPINT1O43278 529 aa13.5□□□□□ -0.25
TRAF4-214ENST00000580073 CD160O95971 181 aa13.5□□□□□ -0.25
TRAF4-214ENST00000580073 KRT3P12035 628 aa13.5□□□□□ -0.25
TRAF4-214ENST00000580073 GZMAP12544 262 aa13.5□□□□□ -0.25
TRAF4-214ENST00000580073 MYF5P13349 255 aa13.5□□□□□ -0.25
TRAF4-214ENST00000580073 GPD1P21695 349 aa13.5□□□□□ -0.25
TRAF4-214ENST00000580073 EPHB2P29323 1055 aa13.5□□□□□ -0.25
TRAF4-214ENST00000580073 SKOR1P84550 965 aa13.5□□□□□ -0.25
TRAF4-214ENST00000580073 C1QBPQ07021 282 aaKnown RBP13.5□□□□□ -0.25
TRAF4-214ENST00000580073 LRRC14Q15048 493 aa13.5□□□□□ -0.25
TRAF4-214ENST00000580073 C15orf59Q2T9L4 293 aaPredicted RBP13.5□□□□□ -0.25
TRAF4-214ENST00000580073 CCDC14Q49A88 953 aa13.5□□□□□ -0.25
TRAF4-214ENST00000580073 FOXR1Q6PIV2 292 aa13.5□□□□□ -0.25
TRAF4-214ENST00000580073 SLFN11Q7Z7L1 901 aa13.5□□□□□ -0.25
TRAF4-214ENST00000580073 TMEM159Q96B96 161 aa13.5□□□□□ -0.25
TRAF4-214ENST00000580073 TMEM74Q96NL1 305 aa13.5□□□□□ -0.25
TRAF4-214ENST00000580073 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.5□□□□□ -0.25
TRAF4-214ENST00000580073 PACSIN1Q9BY11 444 aa13.5□□□□□ -0.25
TRAF4-214ENST00000580073 CPEB1Q9BZB8 566 aaKnown RBP13.5□□□□□ -0.25
TRAF4-214ENST00000580073 TRIM7Q9C029 511 aa13.5□□□□□ -0.25
TRAF4-214ENST00000580073 KLF15Q9UIH9 416 aa13.5□□□□□ -0.25
TRAF4-214ENST00000580073 GGT7Q9UJ14 662 aa13.5□□□□□ -0.25
TRAF4-214ENST00000580073 ZFC3H1O60293 1989 aaKnown RBP13.5□□□□□ -0.25
TRAF4-214ENST00000580073 K7ENP7 123 aa13.49□□□□□ -0.25
TRAF4-214ENST00000580073 TNFSF15O95150 251 aa13.49□□□□□ -0.25
TRAF4-214ENST00000580073 C6P13671 934 aa13.49□□□□□ -0.25
TRAF4-214ENST00000580073 TSHRP16473 764 aa13.49□□□□□ -0.25
TRAF4-214ENST00000580073 FECHP22830 423 aa13.49□□□□□ -0.25
TRAF4-214ENST00000580073 KELP23276 732 aa13.49□□□□□ -0.25
TRAF4-214ENST00000580073 RFC1P35251 1148 aaPredicted RBP13.49□□□□□ -0.25
TRAF4-214ENST00000580073 HK3P52790 923 aa13.49□□□□□ -0.25
TRAF4-214ENST00000580073 RPL7AP62424 266 aaKnown RBP13.49□□□□□ -0.25
TRAF4-214ENST00000580073 OGDHQ02218 1023 aa13.49□□□□□ -0.25
TRAF4-214ENST00000580073 NFATC4Q14934 902 aa13.49□□□□□ -0.25
TRAF4-214ENST00000580073 IRF4Q15306 451 aa13.49□□□□□ -0.25
TRAF4-214ENST00000580073 TMEM52BQ4KMG9 183 aa13.49□□□□□ -0.25
TRAF4-214ENST00000580073 PERM1Q5SV97 790 aa13.49□□□□□ -0.25
TRAF4-214ENST00000580073 ATXN7L2Q5T6C5 722 aaPredicted RBP13.49□□□□□ -0.25
TRAF4-214ENST00000580073 PPP1R2P3Q6NXS1 205 aa13.49□□□□□ -0.25
TRAF4-214ENST00000580073 INO80CQ6PI98 192 aaPredicted RBP13.49□□□□□ -0.25
TRAF4-214ENST00000580073 BRAT1Q6PJG6 821 aa13.49□□□□□ -0.25
TRAF4-214ENST00000580073 CRTC1Q6UUV9 634 aa13.49□□□□□ -0.25
TRAF4-214ENST00000580073 TMEM139Q8IV31 216 aa13.49□□□□□ -0.25
TRAF4-214ENST00000580073 CNGA4Q8IV77 575 aa13.49□□□□□ -0.25
TRAF4-214ENST00000580073 TP53I13Q8NBR0 393 aaPredicted RBP13.49□□□□□ -0.25
TRAF4-214ENST00000580073 C3orf20Q8ND61 904 aa13.49□□□□□ -0.25
TRAF4-214ENST00000580073 PCDH19Q8TAB3 1148 aa13.49□□□□□ -0.25
TRAF4-214ENST00000580073 CENPIQ92674 756 aaPredicted RBP13.49□□□□□ -0.25
TRAF4-214ENST00000580073 GFM1Q96RP9 751 aaKnown RBP13.49□□□□□ -0.25
TRAF4-214ENST00000580073 NHEJ1Q9H9Q4 299 aaPredicted RBP13.49□□□□□ -0.25
TRAF4-214ENST00000580073 SPTLC3Q9NUV7 552 aa13.49□□□□□ -0.25
TRAF4-214ENST00000580073 NDFIP2Q9NV92 336 aa13.49□□□□□ -0.25
TRAF4-214ENST00000580073 SEPT10Q9P0V9 454 aa13.49□□□□□ -0.25
TRAF4-214ENST00000580073 UBA2Q9UBT2 640 aaPredicted RBP13.49□□□□□ -0.25
TRAF4-214ENST00000580073 KLQ9UEF7 1012 aa13.49□□□□□ -0.25
TRAF4-214ENST00000580073 NEU3Q9UQ49 428 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms