RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 HEPHQ9BQS7 1158 aa30.76■■■□□ 2.52
CTCF-203ENST00000566078 ROPN1BQ9BZX4 212 aaPredicted RBP30.76■■■□□ 2.52
CTCF-203ENST00000566078 ROPN1Q9HAT0 212 aaPredicted RBP30.76■■■□□ 2.52
CTCF-203ENST00000566078 PIAS3Q9Y6X2 628 aa30.76■■■□□ 2.52
CTCF-203ENST00000566078 POC1B-GALNT4F8VUJ3 575 aa30.76■■■□□ 2.51
CTCF-203ENST00000566078 TCEA3O75764 348 aa30.76■■■□□ 2.51
CTCF-203ENST00000566078 PIAS1O75925 651 aa30.76■■■□□ 2.51
CTCF-203ENST00000566078 MYZAPP0CAP1 466 aa30.76■■■□□ 2.51
CTCF-203ENST00000566078 BMP1P13497 986 aa30.76■■■□□ 2.51
CTCF-203ENST00000566078 HLA-EP13747 358 aa30.76■■■□□ 2.51
CTCF-203ENST00000566078 PRKCHP24723 683 aa30.76■■■□□ 2.51
CTCF-203ENST00000566078 GRIA4P48058 902 aa30.76■■■□□ 2.51
CTCF-203ENST00000566078 PUS10Q3MIT2 529 aaKnown RBP30.76■■■□□ 2.51
CTCF-203ENST00000566078 KBTBD12Q3ZCT8 623 aa30.76■■■□□ 2.51
CTCF-203ENST00000566078 TXNDC11Q6PKC3 985 aa30.76■■■□□ 2.51
CTCF-203ENST00000566078 SERPINA13PQ6UXR4 307 aa30.76■■■□□ 2.51
CTCF-203ENST00000566078 UNC5BQ8IZJ1 945 aa30.76■■■□□ 2.51
CTCF-203ENST00000566078 SMIM14Q96QK8 99 aa30.76■■■□□ 2.51
CTCF-203ENST00000566078 CENPHQ9H3R5 247 aa30.76■■■□□ 2.51
CTCF-203ENST00000566078 HEBP1Q9NRV9 189 aa30.76■■■□□ 2.51
CTCF-203ENST00000566078 THAP10Q9P2Z0 257 aaPredicted RBP30.76■■■□□ 2.51
CTCF-203ENST00000566078 SPO11Q9Y5K1 396 aa30.76■■■□□ 2.51
CTCF-203ENST00000566078 FAM169AQ9Y6X4 670 aa30.76■■■□□ 2.51
CTCF-203ENST00000566078 ZCWPW2A0A1B0GU75 182 aa30.75■■■□□ 2.51
CTCF-203ENST00000566078 ALDH1A2O94788 518 aa30.75■■■□□ 2.51
CTCF-203ENST00000566078 SYF2O95926 243 aaKnown RBP30.75■■■□□ 2.51
CTCF-203ENST00000566078 UGT2B4P06133 528 aa30.75■■■□□ 2.51
CTCF-203ENST00000566078 SLC8A1P32418 973 aa30.75■■■□□ 2.51
CTCF-203ENST00000566078 HSP90B2PQ58FF3 399 aa30.75■■■□□ 2.51
CTCF-203ENST00000566078 EGFLAMQ63HQ2 1017 aa30.75■■■□□ 2.51
CTCF-203ENST00000566078 PIH1D2Q8WWB5 315 aa30.75■■■□□ 2.51
CTCF-203ENST00000566078 SUV39H2Q9H5I1 410 aa30.75■■■□□ 2.51
CTCF-203ENST00000566078 MOCS1Q9NZB8 636 aa30.75■■■□□ 2.51
CTCF-203ENST00000566078 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP30.75■■■□□ 2.51
CTCF-203ENST00000566078 HCN2Q9UL51 889 aa30.75■■■□□ 2.51
CTCF-203ENST00000566078 BPTFQ12830 3046 aa30.74■■■□□ 2.51
CTCF-203ENST00000566078 EDDM13A0A1B0GTR0 161 aa30.74■■■□□ 2.51
CTCF-203ENST00000566078 ANTXRLA6NF34 631 aa30.74■■■□□ 2.51
CTCF-203ENST00000566078 NARSO43776 548 aaKnown RBP30.74■■■□□ 2.51
CTCF-203ENST00000566078 RPL26P61254 145 aaKnown RBP30.74■■■□□ 2.51
CTCF-203ENST00000566078 HNRNPA1L2Q32P51 320 aaKnown RBP30.74■■■□□ 2.51
CTCF-203ENST00000566078 CROCCP2Q86T23 111 aa30.74■■■□□ 2.51
CTCF-203ENST00000566078 BRSK1Q8TDC3 778 aa30.74■■■□□ 2.51
CTCF-203ENST00000566078 MRRFQ96E11 262 aaKnown RBP30.74■■■□□ 2.51
CTCF-203ENST00000566078 CERS2Q96G23 380 aa30.74■■■□□ 2.51
CTCF-203ENST00000566078 TMEM245Q9H330 911 aa30.74■■■□□ 2.51
CTCF-203ENST00000566078 ZDHHC4Q9NPG8 344 aa30.74■■■□□ 2.51
CTCF-203ENST00000566078 MED4Q9NPJ6 270 aa30.74■■■□□ 2.51
CTCF-203ENST00000566078 PPANQ9NQ55 473 aaKnown RBP30.74■■■□□ 2.51
CTCF-203ENST00000566078 IL1RAPL1Q9NZN1 696 aa30.74■■■□□ 2.51
CTCF-203ENST00000566078 IL36AQ9UHA7 158 aa30.74■■■□□ 2.51
CTCF-203ENST00000566078 RPL26L1Q9UNX3 145 aaKnown RBP30.74■■■□□ 2.51
CTCF-203ENST00000566078 WASF2Q9Y6W5 498 aa30.74■■■□□ 2.51
CTCF-203ENST00000566078 C1QAP02745 245 aa30.73■■■□□ 2.51
CTCF-203ENST00000566078 GCAP28676 217 aa30.73■■■□□ 2.51
CTCF-203ENST00000566078 IL12RB1P42701 662 aa30.73■■■□□ 2.51
CTCF-203ENST00000566078 SMAD1Q15797 465 aaKnown RBP30.73■■■□□ 2.51
CTCF-203ENST00000566078 GDPD4Q6W3E5 623 aa30.73■■■□□ 2.51
CTCF-203ENST00000566078 MTERF4Q7Z6M4 381 aaKnown RBP30.73■■■□□ 2.51
CTCF-203ENST00000566078 RALGPS2Q86X27 583 aaPredicted RBP30.73■■■□□ 2.51
CTCF-203ENST00000566078 ZNF641Q96N77 438 aaPredicted RBP30.73■■■□□ 2.51
CTCF-203ENST00000566078 C8orf33Q9H7E9 229 aaPredicted RBP30.73■■■□□ 2.51
CTCF-203ENST00000566078 TMBIM4Q9HC24 238 aa30.73■■■□□ 2.51
CTCF-203ENST00000566078 SLC2A6Q9UGQ3 507 aa30.73■■■□□ 2.51
CTCF-203ENST00000566078 ZNF106Q9H2Y7 1883 aaKnown RBP30.73■■■□□ 2.51
CTCF-203ENST00000566078 FAM159BA6NKW6 160 aa30.73■■■□□ 2.51
CTCF-203ENST00000566078 CTPS1P17812 591 aa30.73■■■□□ 2.51
CTCF-203ENST00000566078 TNFRSF4P43489 277 aa30.73■■■□□ 2.51
CTCF-203ENST00000566078 LAMB3Q13751 1172 aa30.73■■■□□ 2.51
CTCF-203ENST00000566078 TSTD2Q5T7W7 516 aa30.73■■■□□ 2.51
CTCF-203ENST00000566078 ESRP1Q6NXG1 681 aaKnown RBP30.73■■■□□ 2.51
CTCF-203ENST00000566078 ZSWIM9Q86XI8 627 aa30.73■■■□□ 2.51
CTCF-203ENST00000566078 ECHDC3Q96DC8 303 aa30.73■■■□□ 2.51
CTCF-203ENST00000566078 PAFAH2Q99487 392 aa30.73■■■□□ 2.51
CTCF-203ENST00000566078 PRDM6Q9NQX0 595 aa30.73■■■□□ 2.51
CTCF-203ENST00000566078 SMYD2Q9NRG4 433 aa30.73■■■□□ 2.51
CTCF-203ENST00000566078 TREX1Q9NSU2 369 aa30.73■■■□□ 2.51
CTCF-203ENST00000566078 STARD13Q9Y3M8 1113 aa30.73■■■□□ 2.51
CTCF-203ENST00000566078 ARL5AQ9Y689 179 aa30.73■■■□□ 2.51
CTCF-203ENST00000566078 MROH6A6NGR9 719 aa30.72■■■□□ 2.51
CTCF-203ENST00000566078 H3BQF6 201 aa30.72■■■□□ 2.51
CTCF-203ENST00000566078 LDB2O43679 373 aa30.72■■■□□ 2.51
CTCF-203ENST00000566078 LEFTY1O75610 366 aa30.72■■■□□ 2.51
CTCF-203ENST00000566078 FRG1Q14331 258 aaKnown RBP30.72■■■□□ 2.51
CTCF-203ENST00000566078 CYS1Q717R9 158 aa30.72■■■□□ 2.51
CTCF-203ENST00000566078 NLRP9Q7RTR0 991 aa30.72■■■□□ 2.51
CTCF-203ENST00000566078 GLT6D1Q7Z4J2 308 aa30.72■■■□□ 2.51
CTCF-203ENST00000566078 RASSF3Q86WH2 238 aa30.72■■■□□ 2.51
CTCF-203ENST00000566078 CTAGE3PQ8IX95 158 aa30.72■■■□□ 2.51
CTCF-203ENST00000566078 ARL8AQ96BM9 186 aa30.72■■■□□ 2.51
CTCF-203ENST00000566078 KLHL32Q96NJ5 620 aa30.72■■■□□ 2.51
CTCF-203ENST00000566078 ACOX2Q99424 681 aa30.72■■■□□ 2.51
CTCF-203ENST00000566078 PPCSQ9HAB8 311 aa30.72■■■□□ 2.51
CTCF-203ENST00000566078 VPS18Q9P253 973 aa30.72■■■□□ 2.51
CTCF-203ENST00000566078 CTNNAL1Q9UBT7 734 aa30.72■■■□□ 2.51
CTCF-203ENST00000566078 FETUBQ9UGM5 382 aa30.72■■■□□ 2.51
CTCF-203ENST00000566078 SLC24A2Q9UI40 661 aa30.72■■■□□ 2.51
CTCF-203ENST00000566078 CXorf49A8MYA2 514 aaPredicted RBP30.71■■■□□ 2.51
CTCF-203ENST00000566078 K7EQS6 105 aa30.71■■■□□ 2.51
CTCF-203ENST00000566078 SIN3BO75182 1162 aa30.71■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms