RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 PIGNO95427 931 aa17.42■□□□□ 0.38
CLN3-217ENST00000565354 PEX11BO96011 259 aa17.42■□□□□ 0.38
CLN3-217ENST00000565354 APOC2P02655 101 aa17.42■□□□□ 0.38
CLN3-217ENST00000565354 PECAM1P16284 738 aaPredicted RBP17.42■□□□□ 0.38
CLN3-217ENST00000565354 ITGB7P26010 798 aa17.42■□□□□ 0.38
CLN3-217ENST00000565354 SERPINA4P29622 427 aa17.42■□□□□ 0.38
CLN3-217ENST00000565354 DRD3P35462 400 aa17.42■□□□□ 0.38
CLN3-217ENST00000565354 RGRP47804 291 aa17.42■□□□□ 0.38
CLN3-217ENST00000565354 ATP5OP48047 213 aa17.42■□□□□ 0.38
CLN3-217ENST00000565354 CSNK1DP48730 415 aa17.42■□□□□ 0.38
CLN3-217ENST00000565354 MAXP61244 160 aa17.42■□□□□ 0.38
CLN3-217ENST00000565354 AP1S1P61966 158 aa17.42■□□□□ 0.38
CLN3-217ENST00000565354 BCL2L1Q07817 233 aa17.42■□□□□ 0.38
CLN3-217ENST00000565354 ADCY2Q08462 1091 aa17.42■□□□□ 0.38
CLN3-217ENST00000565354 ZNF805Q5CZA5 627 aa17.42■□□□□ 0.38
CLN3-217ENST00000565354 ZC3H18Q86VM9 953 aaKnown RBP17.42■□□□□ 0.38
CLN3-217ENST00000565354 REXO1L1PQ8IX06 675 aa17.42■□□□□ 0.38
CLN3-217ENST00000565354 MAML1Q92585 1016 aa17.42■□□□□ 0.38
CLN3-217ENST00000565354 OLFM3Q96PB7 478 aa17.42■□□□□ 0.38
CLN3-217ENST00000565354 TUBGCP5Q96RT8 1024 aa17.42■□□□□ 0.38
CLN3-217ENST00000565354 CPEB1Q9BZB8 566 aaKnown RBP17.42■□□□□ 0.38
CLN3-217ENST00000565354 IL21RQ9HBE5 538 aa17.42■□□□□ 0.38
CLN3-217ENST00000565354 TBC1D3DA0A087WVF3 549 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 TBC1D3IA0A087WXS9 549 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 TBC1D3EA0A087X179 549 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 TBC1D3KA0A087X1G2 549 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.41■□□□□ 0.38
CLN3-217ENST00000565354 TBC1D3FA6NER0 549 aaPredicted RBP17.41■□□□□ 0.38
CLN3-217ENST00000565354 TBC1D3LB9A6J9 549 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 KCNK1O00180 336 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 KCNK3O14649 394 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 DKK1O94907 266 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 FSBPO95073 299 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 CER1O95813 267 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 JCHAINP01591 159 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 TBC1D3HP0C7X1 549 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 ADPRHP54922 357 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 ZNF569Q5MCW4 686 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 DCAF12L1Q5VU92 463 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 TBC1D3GQ6DHY5 549 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 TBC1D3CQ6IPX1 549 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 B4GALNT4Q76KP1 1039 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 TBC1D3Q8IZP1 549 aaPredicted RBP17.41■□□□□ 0.38
CLN3-217ENST00000565354 ZCCHC9Q8N567 271 aaKnown RBP17.41■□□□□ 0.38
CLN3-217ENST00000565354 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.41■□□□□ 0.38
CLN3-217ENST00000565354 TEX26Q8N6G2 289 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 CADM4Q8NFZ8 388 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 OR2T34Q8NGX1 318 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 BAHD1Q8TBE0 780 aaPredicted RBP17.41■□□□□ 0.38
CLN3-217ENST00000565354 FATE1Q969F0 183 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 NUDCD1Q96RS6 583 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 MGME1Q9BQP7 344 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 HDAC8Q9BY41 377 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 POLR1EQ9GZS1 481 aaKnown RBP17.41■□□□□ 0.38
CLN3-217ENST00000565354 PCED1AQ9H1Q7 454 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 SUV39H2Q9H5I1 410 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 C6orf106Q9H6K1 298 aaPredicted RBP17.41■□□□□ 0.38
CLN3-217ENST00000565354 GAREM1Q9H706 876 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 TOR4AQ9NXH8 423 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 AMACRQ9UHK6 382 aa17.41■□□□□ 0.38
CLN3-217ENST00000565354 C16orf96A6NNT2 1141 aa17.4■□□□□ 0.38
CLN3-217ENST00000565354 HACD1B0YJ81 288 aa17.4■□□□□ 0.38
CLN3-217ENST00000565354 NEMP1O14524 444 aa17.4■□□□□ 0.38
CLN3-217ENST00000565354 MUSKO15146 869 aa17.4■□□□□ 0.38
CLN3-217ENST00000565354 ADRB3P13945 408 aa17.4■□□□□ 0.38
CLN3-217ENST00000565354 OTUD4Q01804 1114 aaKnown RBP17.4■□□□□ 0.38
CLN3-217ENST00000565354 RALGPS1Q5JS13 557 aa17.4■□□□□ 0.38
CLN3-217ENST00000565354 AGBL4Q5VU57 503 aa17.4■□□□□ 0.38
CLN3-217ENST00000565354 NCEH1Q6PIU2 408 aa17.4■□□□□ 0.38
CLN3-217ENST00000565354 PARS2Q7L3T8 475 aaKnown RBP17.4■□□□□ 0.38
CLN3-217ENST00000565354 TTC7BQ86TV6 843 aa17.4■□□□□ 0.38
CLN3-217ENST00000565354 CDKL3Q8IVW4 592 aaPredicted RBP17.4■□□□□ 0.38
CLN3-217ENST00000565354 PGBD5Q8N414 524 aa17.4■□□□□ 0.38
CLN3-217ENST00000565354 TTC13Q8NBP0 860 aa17.4■□□□□ 0.38
CLN3-217ENST00000565354 ACTL9Q8TC94 416 aa17.4■□□□□ 0.38
CLN3-217ENST00000565354 PDCD6IPQ8WUM4 868 aaKnown RBP17.4■□□□□ 0.38
CLN3-217ENST00000565354 ZNF641Q96N77 438 aaPredicted RBP17.4■□□□□ 0.38
CLN3-217ENST00000565354 CDC6Q99741 560 aa17.4■□□□□ 0.38
CLN3-217ENST00000565354 KDM4CQ9H3R0 1056 aa17.4■□□□□ 0.38
CLN3-217ENST00000565354 TM7SF3Q9NS93 570 aa17.4■□□□□ 0.38
CLN3-217ENST00000565354 PYCARDQ9ULZ3 195 aa17.4■□□□□ 0.38
CLN3-217ENST00000565354 FNDC3AQ9Y2H6 1198 aaKnown RBP17.4■□□□□ 0.38
CLN3-217ENST00000565354 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.4■□□□□ 0.38
CLN3-217ENST00000565354 TTC24A2A3L6 582 aaPredicted RBP17.39■□□□□ 0.37
CLN3-217ENST00000565354 RNF103O00237 685 aa17.39■□□□□ 0.37
CLN3-217ENST00000565354 MTSS1O43312 755 aa17.39■□□□□ 0.37
CLN3-217ENST00000565354 PLRG1O43660 514 aaKnown RBP17.39■□□□□ 0.37
CLN3-217ENST00000565354 PCDH8O95206 1070 aa17.39■□□□□ 0.37
CLN3-217ENST00000565354 ZIC2O95409 532 aaPredicted RBP17.39■□□□□ 0.37
CLN3-217ENST00000565354 HLA-DQB2P05538 268 aa17.39■□□□□ 0.37
CLN3-217ENST00000565354 ATXN1LP0C7T5 689 aaKnown RBP17.39■□□□□ 0.37
CLN3-217ENST00000565354 EIF3EP60228 445 aaKnown RBP17.39■□□□□ 0.37
CLN3-217ENST00000565354 IFI35P80217 286 aaPredicted RBP17.39■□□□□ 0.37
CLN3-217ENST00000565354 BNC1Q01954 994 aa17.39■□□□□ 0.37
CLN3-217ENST00000565354 XRCC4Q13426 336 aa17.39■□□□□ 0.37
CLN3-217ENST00000565354 NOMO1Q15155 1222 aa17.39■□□□□ 0.37
CLN3-217ENST00000565354 PIP5KL1Q5T9C9 394 aa17.39■□□□□ 0.37
CLN3-217ENST00000565354 KIAA0895LQ68EN5 471 aa17.39■□□□□ 0.37
CLN3-217ENST00000565354 IL27RAQ6UWB1 636 aa17.39■□□□□ 0.37
CLN3-217ENST00000565354 DBX2Q6ZNG2 339 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms