RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CATSPERBQ9H7T0 1116 aa17.01■□□□□ 0.31
CLN3-211ENST00000564091 UBA2Q9UBT2 640 aaPredicted RBP17.01■□□□□ 0.31
CLN3-211ENST00000564091 GPR34Q9UPC5 381 aa17.01■□□□□ 0.31
CLN3-211ENST00000564091 CCDC187A0A096LP49 1063 aa17■□□□□ 0.31
CLN3-211ENST00000564091 TMEM110-MUSTN1A8MSY1 372 aa17■□□□□ 0.31
CLN3-211ENST00000564091 RASGRP1O95267 797 aa17■□□□□ 0.31
CLN3-211ENST00000564091 PCCBP05166 539 aa17■□□□□ 0.31
CLN3-211ENST00000564091 ALPIP09923 528 aa17■□□□□ 0.31
CLN3-211ENST00000564091 HTR1BP28222 390 aa17■□□□□ 0.31
CLN3-211ENST00000564091 LIG3P49916 1009 aa17■□□□□ 0.31
CLN3-211ENST00000564091 SUOXP51687 545 aa17■□□□□ 0.31
CLN3-211ENST00000564091 SRP54P61011 504 aaKnown RBP17■□□□□ 0.31
CLN3-211ENST00000564091 CCL7P80098 99 aa17■□□□□ 0.31
CLN3-211ENST00000564091 CLN3Q13286 438 aa17■□□□□ 0.31
CLN3-211ENST00000564091 ERAP2Q6P179 960 aa17■□□□□ 0.31
CLN3-211ENST00000564091 ZSWIM9Q86XI8 627 aa17■□□□□ 0.31
CLN3-211ENST00000564091 DNAAF5Q86Y56 855 aa17■□□□□ 0.31
CLN3-211ENST00000564091 CAMK1DQ8IU85 385 aa17■□□□□ 0.31
CLN3-211ENST00000564091 SDR16C5Q8N3Y7 309 aa17■□□□□ 0.31
CLN3-211ENST00000564091 SCG3Q8WXD2 468 aaKnown RBP17■□□□□ 0.31
CLN3-211ENST00000564091 CCDC97Q96F63 343 aaPredicted RBP17■□□□□ 0.31
CLN3-211ENST00000564091 CELF6Q96J87 481 aaKnown RBP17■□□□□ 0.31
CLN3-211ENST00000564091 AGPAT1Q99943 283 aa17■□□□□ 0.31
CLN3-211ENST00000564091 FOXP3Q9BZS1 431 aa17■□□□□ 0.31
CLN3-211ENST00000564091 LRRC19Q9H756 370 aa17■□□□□ 0.31
CLN3-211ENST00000564091 PDFQ9HBH1 243 aa17■□□□□ 0.31
CLN3-211ENST00000564091 GPATCH2LQ9NWQ4 482 aa17■□□□□ 0.31
CLN3-211ENST00000564091 SHROOM3Q8TF72 1996 aa16.99■□□□□ 0.31
CLN3-211ENST00000564091 A0A1W2PQM1 296 aa16.99■□□□□ 0.31
CLN3-211ENST00000564091 TSPAN11A1L157 253 aa16.99■□□□□ 0.31
CLN3-211ENST00000564091 CAPN8A6NHC0 703 aa16.99■□□□□ 0.31
CLN3-211ENST00000564091 K7ENP7 123 aa16.99■□□□□ 0.31
CLN3-211ENST00000564091 RPLP0P05388 317 aaKnown RBP16.99■□□□□ 0.31
CLN3-211ENST00000564091 KRT10P13645 584 aa16.99■□□□□ 0.31
CLN3-211ENST00000564091 HGFP14210 728 aa16.99■□□□□ 0.31
CLN3-211ENST00000564091 RGRP47804 291 aa16.99■□□□□ 0.31
CLN3-211ENST00000564091 COPB1P53618 953 aaKnown RBP16.99■□□□□ 0.31
CLN3-211ENST00000564091 OGDHQ02218 1023 aa16.99■□□□□ 0.31
CLN3-211ENST00000564091 ZSCAN23Q3MJ62 389 aa16.99■□□□□ 0.31
CLN3-211ENST00000564091 PPP1R15BQ5SWA1 713 aa16.99■□□□□ 0.31
CLN3-211ENST00000564091 CFAP58Q5T655 872 aa16.99■□□□□ 0.31
CLN3-211ENST00000564091 INO80CQ6PI98 192 aaPredicted RBP16.99■□□□□ 0.31
CLN3-211ENST00000564091 LVRNQ6Q4G3 990 aa16.99■□□□□ 0.31
CLN3-211ENST00000564091 CLEC14AQ86T13 490 aa16.99■□□□□ 0.31
CLN3-211ENST00000564091 FBXO39Q8N4B4 442 aa16.99■□□□□ 0.31
CLN3-211ENST00000564091 PLA2G15Q8NCC3 412 aa16.99■□□□□ 0.31
CLN3-211ENST00000564091 NEK11Q8NG66 645 aa16.99■□□□□ 0.31
CLN3-211ENST00000564091 HCAR2Q8TDS4 363 aa16.99■□□□□ 0.31
CLN3-211ENST00000564091 PDXPQ96GD0 296 aa16.99■□□□□ 0.31
CLN3-211ENST00000564091 CNPY3Q9BT09 278 aa16.99■□□□□ 0.31
CLN3-211ENST00000564091 EPB41L5Q9HCM4 733 aa16.99■□□□□ 0.31
CLN3-211ENST00000564091 KLQ9UEF7 1012 aa16.99■□□□□ 0.31
CLN3-211ENST00000564091 ANKRD62A6NC57 917 aa16.98■□□□□ 0.31
CLN3-211ENST00000564091 AGRPO00253 132 aa16.98■□□□□ 0.31
CLN3-211ENST00000564091 PLD2O14939 933 aa16.98■□□□□ 0.31
CLN3-211ENST00000564091 PRAMEF11O60813 436 aa16.98■□□□□ 0.31
CLN3-211ENST00000564091 ITGA2BP08514 1039 aa16.98■□□□□ 0.31
CLN3-211ENST00000564091 TPI1P60174 286 aa16.98■□□□□ 0.31
CLN3-211ENST00000564091 DCUN1D2Q6PH85 259 aa16.98■□□□□ 0.31
CLN3-211ENST00000564091 BRAT1Q6PJG6 821 aa16.98■□□□□ 0.31
CLN3-211ENST00000564091 CCDC81Q6ZN84 652 aa16.98■□□□□ 0.31
CLN3-211ENST00000564091 GKN2Q86XP6 184 aa16.98■□□□□ 0.31
CLN3-211ENST00000564091 SFTPA2Q8IWL1 248 aa16.98■□□□□ 0.31
CLN3-211ENST00000564091 Q8N9G6 341 aaPredicted RBP16.98■□□□□ 0.31
CLN3-211ENST00000564091 LIN37Q96GY3 246 aaPredicted RBP16.98■□□□□ 0.31
CLN3-211ENST00000564091 ZNF641Q96N77 438 aaPredicted RBP16.98■□□□□ 0.31
CLN3-211ENST00000564091 GFM1Q96RP9 751 aaKnown RBP16.98■□□□□ 0.31
CLN3-211ENST00000564091 SLC39A8Q9C0K1 460 aa16.98■□□□□ 0.31
CLN3-211ENST00000564091 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.98■□□□□ 0.31
CLN3-211ENST00000564091 ATP8A1Q9Y2Q0 1164 aa16.98■□□□□ 0.31
CLN3-211ENST00000564091 PIEZO2Q9H5I5 2752 aa16.97■□□□□ 0.31
CLN3-211ENST00000564091 D6RAR5 112 aa16.97■□□□□ 0.31
CLN3-211ENST00000564091 J3QKU1 62 aa16.97■□□□□ 0.31
CLN3-211ENST00000564091 FGF10O15520 208 aaPredicted RBP16.97■□□□□ 0.31
CLN3-211ENST00000564091 EFSO43281 561 aa16.97■□□□□ 0.31
CLN3-211ENST00000564091 TNFP01375 233 aa16.97■□□□□ 0.31
CLN3-211ENST00000564091 SLC5A2P31639 672 aa16.97■□□□□ 0.31
CLN3-211ENST00000564091 UGT1A5P35504 534 aa16.97■□□□□ 0.31
CLN3-211ENST00000564091 MMP12P39900 470 aa16.97■□□□□ 0.31
CLN3-211ENST00000564091 MLLT3P42568 568 aaPredicted RBP16.97■□□□□ 0.31
CLN3-211ENST00000564091 PAPOLAP51003 745 aaKnown RBP16.97■□□□□ 0.31
CLN3-211ENST00000564091 NDST2P52849 883 aa16.97■□□□□ 0.31
CLN3-211ENST00000564091 AIF1P55008 147 aa16.97■□□□□ 0.31
CLN3-211ENST00000564091 UBXN1Q04323 297 aa16.97■□□□□ 0.31
CLN3-211ENST00000564091 GRM3Q14832 879 aa16.97■□□□□ 0.31
CLN3-211ENST00000564091 CA9Q16790 459 aa16.97■□□□□ 0.31
CLN3-211ENST00000564091 RAB11FIP2Q7L804 512 aa16.97■□□□□ 0.31
CLN3-211ENST00000564091 JAMLQ86YT9 394 aa16.97■□□□□ 0.31
CLN3-211ENST00000564091 MCOLN2Q8IZK6 566 aa16.97■□□□□ 0.31
CLN3-211ENST00000564091 TSEN2Q8NCE0 465 aaKnown RBP16.97■□□□□ 0.31
CLN3-211ENST00000564091 OR1E3Q8WZA6 343 aa16.97■□□□□ 0.31
CLN3-211ENST00000564091 FUBP1Q96AE4 644 aaKnown RBP16.97■□□□□ 0.31
CLN3-211ENST00000564091 WDR92Q96MX6 357 aa16.97■□□□□ 0.31
CLN3-211ENST00000564091 LRRN3Q9H3W5 708 aa16.97■□□□□ 0.31
CLN3-211ENST00000564091 MRPL40Q9NQ50 206 aaKnown RBP16.97■□□□□ 0.31
CLN3-211ENST00000564091 TAS2R14Q9NYV8 317 aa16.97■□□□□ 0.31
CLN3-211ENST00000564091 DOCK4Q8N1I0 1966 aa16.97■□□□□ 0.31
CLN3-211ENST00000564091 TMEM202A6NGA9 273 aa16.96■□□□□ 0.31
CLN3-211ENST00000564091 LGALS16A8MUM7 142 aa16.96■□□□□ 0.31
CLN3-211ENST00000564091 PYCARD-AS1I3L0S3 204 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms