RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 AAGABQ6PD74 315 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 ZNF813Q6ZN06 617 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 ZNF793Q6ZN11 406 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 CFAP77Q6ZQR2 320 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 ZNF788Q6ZQV5 615 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 KDELC2Q7Z4H8 507 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 SERPINA11Q86U17 422 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 TBC1D26Q86UD7 250 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 HAPLN4Q86UW8 402 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 AACSQ86V21 672 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 KBTBD6Q86V97 674 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 SLC35F3Q8IY50 421 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 ADGRF2Q8IZF7 708 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 TAGAPQ8N103 731 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 SLC25A41Q8N5S1 370 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 HORMAD2Q8N7B1 307 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 FAM47BQ8NA70 645 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 IL17RCQ8NAC3 791 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 KCTD6Q8NC69 237 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 HJURPQ8NCD3 748 aaPredicted RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 CCDC191Q8NCU4 936 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 GADD45GIP1Q8TAE8 222 aaPredicted RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 GABPB2Q8TAK5 448 aaPredicted RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 GPT2Q8TD30 523 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 TMEM170AQ8WVE7 144 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 SNRNP27Q8WVK2 155 aaKnown RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 DDB2Q92466 427 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 DPF1Q92782 380 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 FAM149B1Q96BN6 582 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 ZC3HAV1LQ96H79 300 aaKnown RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 RADILQ96JH8 1075 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 PPP1R13BQ96KQ4 1090 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 SIN3AQ96ST3 1273 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 MAP7D2Q96T17 732 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 MXRA8Q9BRK3 442 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 H2AFJQ9BTM1 129 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 TXLNGYQ9BZA5 131 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 NPFFR1Q9GZQ6 430 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 SMARCAD1Q9H4L7 1026 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 MVB12BQ9H7P6 319 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 SPATS2LQ9NUQ6 558 aaKnown RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 TMEM184CQ9NVA4 438 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 EHD2Q9NZN4 543 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 SUCLA2Q9P2R7 463 aaPredicted RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 FBXO40Q9UH90 709 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 IPO11Q9UI26 975 aaKnown RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 HAO1Q9UJM8 370 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 PADI1Q9ULC6 663 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 NENFQ9UMX5 172 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 TMEM5Q9Y2B1 443 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 AAR2Q9Y312 384 aaKnown RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 FAM96BQ9Y3D0 163 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 PTRH2Q9Y3E5 179 aaKnown RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 RAP2CQ9Y3L5 183 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 TTLL3Q9Y4R7 772 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 LRP12Q9Y561 859 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 MAGED1Q9Y5V3 778 aaPredicted RBP1.71□□□□□ -2.14
USP3-209ENST00000558925 FAM169AQ9Y6X4 670 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 A3GALT2U3KPV4 340 aa1.71□□□□□ -2.14
USP3-209ENST00000558925 WDR17Q8IZU2 1322 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 TRBV5-3A0A0A0MS03 114 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 FAM237AA0A1B0GTK4 181 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 SMIM35A0A1B0GVV1 85 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 C1orf226A1L170 272 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 TYW5A2RUC4 315 aaKnown RBP1.7□□□□□ -2.14
USP3-209ENST00000558925 DPPA5A6NC42 116 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 TMEM247A6NEH6 219 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 USP17L23D6RBM5 183 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 TAF4O00268 1085 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 CHL1O00533 1208 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 EBAG9O00559 213 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 UBE2CO00762 179 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 HSPB6O14558 160 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 CTDSP2O14595 271 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 TP73O15350 636 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 TSPAN9O75954 239 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 RGS11O94810 467 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 TPPPO94811 219 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 TOP3BO95985 862 aaKnown RBP1.7□□□□□ -2.14
USP3-209ENST00000558925 MT-CYBP00156 380 aaPredicted RBP1.7□□□□□ -2.14
USP3-209ENST00000558925 CYC1P08574 325 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 NR2F1P10589 423 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 TFPIP10646 304 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 ETFAP13804 333 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 ATP5F1P24539 256 aaPredicted RBP1.7□□□□□ -2.14
USP3-209ENST00000558925 CCKBRP32239 447 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 DCTDP32321 178 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 RFC1P35251 1148 aaPredicted RBP1.7□□□□□ -2.14
USP3-209ENST00000558925 SLC16A2P36021 539 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 SLC15A1P46059 708 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 NRIP1P48552 1158 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 CENPAP49450 140 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 MRPL12P52815 198 aaKnown RBP1.7□□□□□ -2.14
USP3-209ENST00000558925 PMS2P54278 862 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 SLC12A2P55011 1212 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 SOX10P56693 466 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 KRTAP10-5P60370 271 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 ZBED6P86452 979 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 GAD2Q05329 585 aa1.7□□□□□ -2.14
USP3-209ENST00000558925 ZNF91Q05481 1191 aa1.7□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms