RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 SLC18A3Q16572 532 aa18.35■□□□□ 0.53
SHMT2-206ENST00000553529 BOLA3Q53S33 107 aa18.35■□□□□ 0.53
SHMT2-206ENST00000553529 TMCO4Q5TGY1 634 aa18.35■□□□□ 0.53
SHMT2-206ENST00000553529 RFLNAQ6ZTI6 216 aa18.35■□□□□ 0.53
SHMT2-206ENST00000553529 PQLC3Q8N755 202 aa18.35■□□□□ 0.53
SHMT2-206ENST00000553529 TEKT4Q8WW24 435 aa18.35■□□□□ 0.53
SHMT2-206ENST00000553529 RAPGEF5Q92565 580 aa18.35■□□□□ 0.53
SHMT2-206ENST00000553529 TSACCQ96A04 125 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-206ENST00000553529 EIF3CQ99613 913 aaKnown RBP18.35■□□□□ 0.53
SHMT2-206ENST00000553529 LRRC61Q9BV99 259 aa18.35■□□□□ 0.53
SHMT2-206ENST00000553529 CLPBQ9H078 707 aa18.35■□□□□ 0.53
SHMT2-206ENST00000553529 NOD2Q9HC29 1040 aa18.35■□□□□ 0.53
SHMT2-206ENST00000553529 ATP8A1Q9Y2Q0 1164 aa18.35■□□□□ 0.53
SHMT2-206ENST00000553529 RAXQ9Y2V3 346 aa18.35■□□□□ 0.53
SHMT2-206ENST00000553529 ZZEF1O43149 2961 aa18.35■□□□□ 0.53
SHMT2-206ENST00000553529 MYO1FO00160 1098 aa18.34■□□□□ 0.53
SHMT2-206ENST00000553529 PROSCO94903 275 aa18.34■□□□□ 0.53
SHMT2-206ENST00000553529 GBE1Q04446 702 aa18.34■□□□□ 0.53
SHMT2-206ENST00000553529 SLC10A2Q12908 348 aaPredicted RBP18.34■□□□□ 0.53
SHMT2-206ENST00000553529 TARDBPQ13148 414 aaKnown RBP eCLIP18.34■□□□□ 0.53
SHMT2-206ENST00000553529 MESDQ14696 234 aa18.34■□□□□ 0.53
SHMT2-206ENST00000553529 ACAP1Q15027 740 aa18.34■□□□□ 0.53
SHMT2-206ENST00000553529 SKOR2Q2VWA4 1001 aaPredicted RBP18.34■□□□□ 0.53
SHMT2-206ENST00000553529 C19orf48Q6RUI8 117 aa18.34■□□□□ 0.53
SHMT2-206ENST00000553529 PROSER1Q86XN7 944 aa18.34■□□□□ 0.53
SHMT2-206ENST00000553529 ATPAF2Q8N5M1 289 aa18.34■□□□□ 0.53
SHMT2-206ENST00000553529 OR8K1Q8NGG5 319 aa18.34■□□□□ 0.53
SHMT2-206ENST00000553529 FAM71BQ8TC56 605 aa18.34■□□□□ 0.53
SHMT2-206ENST00000553529 PDCD6IPQ8WUM4 868 aaKnown RBP18.34■□□□□ 0.53
SHMT2-206ENST00000553529 PTCD2Q8WV60 388 aaKnown RBP18.34■□□□□ 0.53
SHMT2-206ENST00000553529 PSKH2Q96QS6 385 aa18.34■□□□□ 0.53
SHMT2-206ENST00000553529 B4GALT6Q9UBX8 382 aa18.34■□□□□ 0.53
SHMT2-206ENST00000553529 CTPS1P17812 591 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 PTMSP20962 102 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 SERPINA4P29622 427 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 DAB2P98082 770 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 BCL2L1Q07817 233 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 ZNF211Q13398 564 aaPredicted RBP18.33■□□□□ 0.52
SHMT2-206ENST00000553529 ZNF235Q14590 738 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 INPP5AQ14642 412 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 CDKN3Q16667 212 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 ANKRD20A8PQ5CZ79 823 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 CFAP58Q5T655 872 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 DENND2CQ68D51 928 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 LIPIQ6XZB0 460 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 RD3Q7Z3Z2 195 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 TSPAN33Q86UF1 283 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 PHACTR4Q8IZ21 702 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 DENND6BQ8NEG7 585 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 ASB12Q8WXK4 309 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 CRELD1Q96HD1 420 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 ZNF641Q96N77 438 aaPredicted RBP18.33■□□□□ 0.52
SHMT2-206ENST00000553529 TUBGCP5Q96RT8 1024 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 LGR4Q9BXB1 951 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 GOLPH3Q9H4A6 298 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 ATP13A3Q9H7F0 1226 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 NHEJ1Q9H9Q4 299 aaPredicted RBP18.33■□□□□ 0.52
SHMT2-206ENST00000553529 NT5MQ9NPB1 228 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 MRPL40Q9NQ50 206 aaKnown RBP18.33■□□□□ 0.52
SHMT2-206ENST00000553529 SEPT3Q9UH03 358 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 PCDHB1Q9Y5F3 818 aa18.33■□□□□ 0.52
SHMT2-206ENST00000553529 DMXL2Q8TDJ6 3036 aa18.32■□□□□ 0.52
SHMT2-206ENST00000553529 LZTS3O60299 673 aaPredicted RBP18.32■□□□□ 0.52
SHMT2-206ENST00000553529 RECQL5O94762 991 aaPredicted RBP18.32■□□□□ 0.52
SHMT2-206ENST00000553529 PDHA1P08559 390 aa18.32■□□□□ 0.52
SHMT2-206ENST00000553529 ALPIP09923 528 aa18.32■□□□□ 0.52
SHMT2-206ENST00000553529 LHCGRP22888 699 aa18.32■□□□□ 0.52
SHMT2-206ENST00000553529 ACP1P24666 158 aa18.32■□□□□ 0.52
SHMT2-206ENST00000553529 CSNK1DP48730 415 aa18.32■□□□□ 0.52
SHMT2-206ENST00000553529 DSC2Q02487 901 aa18.32■□□□□ 0.52
SHMT2-206ENST00000553529 LRRC14Q15048 493 aa18.32■□□□□ 0.52
SHMT2-206ENST00000553529 LLGL1Q15334 1064 aa18.32■□□□□ 0.52
SHMT2-206ENST00000553529 ALG11Q2TAA5 492 aa18.32■□□□□ 0.52
SHMT2-206ENST00000553529 PRRT3Q5FWE3 981 aa18.32■□□□□ 0.52
SHMT2-206ENST00000553529 PERM1Q5SV97 790 aa18.32■□□□□ 0.52
SHMT2-206ENST00000553529 GUSBP11Q6P575 273 aa18.32■□□□□ 0.52
SHMT2-206ENST00000553529 SLC35G2Q8TBE7 412 aa18.32■□□□□ 0.52
SHMT2-206ENST00000553529 PDXPQ96GD0 296 aa18.32■□□□□ 0.52
SHMT2-206ENST00000553529 MGME1Q9BQP7 344 aa18.32■□□□□ 0.52
SHMT2-206ENST00000553529 SCUBE2Q9NQ36 999 aa18.32■□□□□ 0.52
SHMT2-206ENST00000553529 APOBEC3BQ9UH17 382 aaKnown RBP18.32■□□□□ 0.52
SHMT2-206ENST00000553529 PCDHGA1Q9Y5H4 931 aa18.32■□□□□ 0.52
SHMT2-206ENST00000553529 PMS2P1A4D2B8 440 aa18.31■□□□□ 0.52
SHMT2-206ENST00000553529 NPIPB15A6NHN6 443 aaPredicted RBP18.31■□□□□ 0.52
SHMT2-206ENST00000553529 AQP9O43315 295 aa18.31■□□□□ 0.52
SHMT2-206ENST00000553529 CBFA2T2O43439 604 aa18.31■□□□□ 0.52
SHMT2-206ENST00000553529 AKR1B10O60218 316 aa18.31■□□□□ 0.52
SHMT2-206ENST00000553529 H2AFZP0C0S5 128 aa18.31■□□□□ 0.52
SHMT2-206ENST00000553529 TMEM253P0C7T8 217 aa18.31■□□□□ 0.52
SHMT2-206ENST00000553529 TNNT1P13805 278 aa18.31■□□□□ 0.52
SHMT2-206ENST00000553529 TSHRP16473 764 aa18.31■□□□□ 0.52
SHMT2-206ENST00000553529 MMP13P45452 471 aa18.31■□□□□ 0.52
SHMT2-206ENST00000553529 THOP1P52888 689 aa18.31■□□□□ 0.52
SHMT2-206ENST00000553529 ELP6Q0PNE2 266 aa18.31■□□□□ 0.52
SHMT2-206ENST00000553529 TBX2Q13207 712 aaPredicted RBP18.31■□□□□ 0.52
SHMT2-206ENST00000553529 CNGA3Q16281 694 aa18.31■□□□□ 0.52
SHMT2-206ENST00000553529 BRAT1Q6PJG6 821 aa18.31■□□□□ 0.52
SHMT2-206ENST00000553529 NPNTQ6UXI9 565 aa18.31■□□□□ 0.52
SHMT2-206ENST00000553529 H2AFVQ71UI9 128 aa18.31■□□□□ 0.52
SHMT2-206ENST00000553529 DPPA4Q7L190 304 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms