RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 REP15Q6BDI9 236 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 TFAP2DQ7Z6R9 452 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 AMIGO2Q86SJ2 522 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 CUZD1Q86UP6 607 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 TMEM86AQ8N2M4 240 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 LPGAT1Q92604 370 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 C3orf30Q96M34 536 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 MRPL1Q9BYD6 325 aaKnown RBP7.55□□□□□ -1.2
LIMA1-213ENST00000552720 NOL6Q9H6R4 1146 aaKnown RBP7.55□□□□□ -1.2
LIMA1-213ENST00000552720 COQ10BQ9H8M1 238 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 CACNA2D2Q9NY47 1150 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 ETAA1Q9NY74 926 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 KCTD3Q9Y597 815 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 COMMD3-BMI1R4GMX3 469 aa7.55□□□□□ -1.2
LIMA1-213ENST00000552720 LRRC14BA6NHZ5 514 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 TRPC5OSA6NMA1 111 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 J3KR12 359 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 SLC22A2O15244 555 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 ZNF26P17031 533 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-213ENST00000552720 PCSK6P29122 969 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 ADSLP30566 484 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-213ENST00000552720 ARSDP51689 593 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 HK2P52789 917 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 GEMP55040 296 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 CDKN2DP55273 166 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 CDH13P55290 713 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 PFKPQ01813 784 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 ITKQ08881 620 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 SLC10A7Q0GE19 358 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 CYTH1Q15438 398 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 MTX3Q5HYI7 312 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 GPR158Q5T848 1215 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 ZFP1Q6P2D0 407 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 KLHDC10Q6PID8 442 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 CHSY3Q70JA7 882 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 PIWIL4Q7Z3Z4 852 aaKnown RBP7.54□□□□□ -1.2
LIMA1-213ENST00000552720 ADCY4Q8NFM4 1077 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 OR13J1Q8NGT2 312 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 ZFP28Q8NHY6 868 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 GTF3C2Q8WUA4 911 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-213ENST00000552720 EME1Q96AY2 570 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 ASB9Q96DX5 294 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 ZNF512Q96ME7 567 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-213ENST00000552720 SLC29A1Q99808 456 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 TRIM8Q9BZR9 551 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 ALG9Q9H6U8 611 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 AGO3Q9H9G7 860 aaKnown RBP7.54□□□□□ -1.2
LIMA1-213ENST00000552720 VCX3AQ9NNX9 186 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 NT5MQ9NPB1 228 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 DDX18Q9NVP1 670 aaKnown RBP7.54□□□□□ -1.2
LIMA1-213ENST00000552720 RRN3Q9NYV6 651 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 MARCH4Q9P2E8 410 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-213ENST00000552720 CRYL1Q9Y2S2 319 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 HS3ST4Q9Y661 456 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 SLC4A7Q9Y6M7 1214 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 ANKRD36A6QL64 1941 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 A0A087X1B8 175 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 SMIM31A0A1B0GVY4 71 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 UNCXA6NJT0 531 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 E9PAM4 449 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 PSMD12O00232 456 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-213ENST00000552720 PLOD2O00469 737 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 TRIM24O15164 1050 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 UBDO15205 165 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 PSMD3O43242 534 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 IPO13O94829 963 aaKnown RBP7.54□□□□□ -1.2
LIMA1-213ENST00000552720 SLC4A1P02730 911 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 HSPA1AP0DMV8 641 aaKnown RBP7.54□□□□□ -1.2
LIMA1-213ENST00000552720 HSPA1BP0DMV9 641 aaKnown RBP7.54□□□□□ -1.2
LIMA1-213ENST00000552720 HAPLN1P10915 354 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-213ENST00000552720 CD86P42081 329 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 RPL5P46777 297 aaKnown RBP7.54□□□□□ -1.2
LIMA1-213ENST00000552720 SLC5A3P53794 718 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 POU4F1Q01851 419 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 DSC2Q02487 901 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 TRIM25Q14258 630 aaKnown RBP7.54□□□□□ -1.2
LIMA1-213ENST00000552720 RFTN1Q14699 578 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-213ENST00000552720 FBXO48Q5FWF7 155 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 MANEALQ5VSG8 457 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 KIAA0930Q6ICG6 404 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-213ENST00000552720 HMBOX1Q6NT76 420 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 FAM171BQ6P995 826 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 KDELC1Q6UW63 502 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 CD300LGQ6UXG3 332 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 USP50Q70EL3 339 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-213ENST00000552720 SCD5Q86SK9 330 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 MYO1HQ8N1T3 1032 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 OR52K2Q8NGK3 314 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 CIB1Q99828 191 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 REPIN1Q9BWE0 567 aaKnown RBP7.54□□□□□ -1.2
LIMA1-213ENST00000552720 SENP6Q9GZR1 1112 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-213ENST00000552720 RBM38Q9H0Z9 239 aaKnown RBP7.54□□□□□ -1.2
LIMA1-213ENST00000552720 GSTO2Q9H4Y5 243 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 IL1RL2Q9HB29 575 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 ENTPD7Q9NQZ7 604 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 SLC38A7Q9NVC3 462 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 OSER1Q9NX31 292 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 IPO11Q9UI26 975 aaKnown RBP7.54□□□□□ -1.2
LIMA1-213ENST00000552720 RNF11Q9Y3C5 154 aa7.54□□□□□ -1.2
LIMA1-213ENST00000552720 SNX13Q9Y5W8 968 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms