RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 NEU3Q9UQ49 428 aa13.82□□□□□ -0.2
VPS33A-208ENST00000543633 PRORSD1PA6NEY8 169 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 AQP12BA6NM10 295 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 MATN3O15232 486 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 HNRNPRO43390 633 aaKnown RBP13.81□□□□□ -0.2
VPS33A-208ENST00000543633 HTRA2O43464 458 aaPredicted RBP13.81□□□□□ -0.2
VPS33A-208ENST00000543633 GPC4O75487 556 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 TRPA1O75762 1119 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 TCN1P20061 433 aaPredicted RBP13.81□□□□□ -0.2
VPS33A-208ENST00000543633 STX1BP61266 288 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 NFKB2Q00653 900 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 CTBP1Q13363 440 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 POU6F1Q14863 301 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 ACAP2Q15057 778 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 MTX3Q5HYI7 312 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 WSCD1Q658N2 575 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 DHFR2Q86XF0 187 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 AQP12AQ8IXF9 295 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 LRRC43Q8N309 656 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 PCDH20Q8N6Y1 951 aaKnown RBP13.81□□□□□ -0.2
VPS33A-208ENST00000543633 C2orf69Q8N8R5 385 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 OR6J1Q8NGC5 347 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 ADAMTS16Q8TE57 1224 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 L3HYPDHQ96EM0 354 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 ASB2Q96Q27 587 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 CYP2S1Q96SQ9 504 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 OLAHQ9NV23 265 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 UBP1Q9NZI7 540 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 FNIP2Q9P278 1114 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 MTF2Q9Y483 593 aaPredicted RBP13.81□□□□□ -0.2
VPS33A-208ENST00000543633 TRIM64A6NGJ6 449 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 HHLA1C9JL84 531 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 EMP3P54852 163 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 NUP107P57740 925 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 BNIP2Q12982 314 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 ZNF460Q14592 562 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 LPIN1Q14693 890 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 SNX17Q15036 470 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 CYTH1Q15438 398 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 BRMS1LQ5PSV4 323 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 BTBD8Q5XKL5 378 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 NEPROQ6NW34 567 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 PAOXQ6QHF9 649 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 LPCAT2Q7L5N7 544 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 ARHGAP12Q8IWW6 846 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 FIBCD1Q8N539 461 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 FAM156AQ8NDB6 213 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 ZMIZ2Q8NF64 920 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 IPMKQ8NFU5 416 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 ITFG2Q969R8 447 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.81□□□□□ -0.2
VPS33A-208ENST00000543633 SMARCD1Q96GM5 515 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 PPP1R10Q96QC0 940 aaKnown RBP13.81□□□□□ -0.2
VPS33A-208ENST00000543633 OMDQ99983 421 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 MUC13Q9H3R2 512 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 GOLGA2P5Q9HBQ8 144 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 ARNT2Q9HBZ2 717 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 CSNK1G1Q9HCP0 422 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 ACSS2Q9NR19 701 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 DDX18Q9NVP1 670 aaKnown RBP13.81□□□□□ -0.2
VPS33A-208ENST00000543633 KLK14Q9P0G3 267 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 ABCD2Q9UBJ2 740 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 ZNHIT2Q9UHR6 403 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 CDH9Q9ULB4 789 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 SNX13Q9Y5W8 968 aa13.81□□□□□ -0.2
VPS33A-208ENST00000543633 TRPM7Q96QT4 1865 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 A0A087WXM4 84 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 A0A0J9YVX5 310 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 H3BSA7 217 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 TNPO2O14787 897 aaKnown RBP13.8□□□□□ -0.2
VPS33A-208ENST00000543633 PAPSS2O95340 614 aaPredicted RBP13.8□□□□□ -0.2
VPS33A-208ENST00000543633 IGLV3-25P01717 112 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 YY1P25490 414 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 PCSK6P29122 969 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 LEPRP48357 1165 aaKnown RBP13.8□□□□□ -0.2
VPS33A-208ENST00000543633 NRF1Q16656 503 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 MAP7D1Q3KQU3 841 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 COQ5Q5HYK3 327 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 NHSL2Q5HYW2 709 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 KIAA0319Q5VV43 1072 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 HMBOX1Q6NT76 420 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 SPATA22Q8NHS9 363 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 SLC45A3Q96JT2 553 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 UBXN10Q96LJ8 280 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 HOPXQ9BPY8 73 aaPredicted RBP13.8□□□□□ -0.2
VPS33A-208ENST00000543633 PCDHAC1Q9H158 963 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 CATSPERBQ9H7T0 1116 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 CCM2LQ9NUG4 571 aaPredicted RBP13.8□□□□□ -0.2
VPS33A-208ENST00000543633 SLC38A7Q9NVC3 462 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 GINS2Q9Y248 185 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 NDUFAF1Q9Y375 327 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 IPPQ9Y573 584 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 NUP205Q92621 2012 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 MYOCOSA0A1B0GUC4 107 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 WISP3O95389 354 aaPredicted RBP13.8□□□□□ -0.2
VPS33A-208ENST00000543633 SNAI1O95863 264 aaPredicted RBP13.8□□□□□ -0.2
VPS33A-208ENST00000543633 PYGLP06737 847 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 SMIM10L2AP0DMW4 78 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 SMIM10L2BP0DMW5 78 aa13.8□□□□□ -0.2
VPS33A-208ENST00000543633 HSD17B1P14061 328 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms