RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 BAHCC1Q9P281 2608 aa14.86□□□□□ -0.03
VPS28-215ENST00000531924 LRRC53A6NM62 1247 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 TEX33O43247 280 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 ATMINO43313 823 aaPredicted RBP14.85□□□□□ -0.03
VPS28-215ENST00000531924 TCEA3O75764 348 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 FTLP02792 175 aaPredicted RBP14.85□□□□□ -0.03
VPS28-215ENST00000531924 PCCBP05166 539 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 HK3P52790 923 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 UCNP55089 124 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 POLR2LP62875 67 aaKnown RBP14.85□□□□□ -0.03
VPS28-215ENST00000531924 TLE3Q04726 772 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 BCL2L1Q07817 233 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 SPIDRQ14159 915 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 INPP5AQ14642 412 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 NFATC4Q14934 902 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 WSCD2Q2TBF2 565 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 ANO6Q4KMQ2 910 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 PLEKHA7Q6IQ23 1121 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 APTXQ7Z2E3 356 aaKnown RBP14.85□□□□□ -0.03
VPS28-215ENST00000531924 GKN2Q86XP6 184 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 SLC35F3Q8IY50 421 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 KCNE4Q8WWG9 221 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 TSACCQ96A04 125 aaPredicted RBP14.85□□□□□ -0.03
VPS28-215ENST00000531924 VOPP1Q96AW1 172 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 TRIM11Q96F44 468 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 ATXN7L3BQ96GX2 97 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 PDFQ9HBH1 243 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 RTN4Q9NQC3 1192 aaKnown RBP14.85□□□□□ -0.03
VPS28-215ENST00000531924 SIRPGQ9P1W8 387 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 KLQ9UEF7 1012 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 SATB2Q9UPW6 733 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 OR1A2Q9Y585 309 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 SCINQ9Y6U3 715 aa14.85□□□□□ -0.03
VPS28-215ENST00000531924 TEX51A0A1B0GUA7 166 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 TSPAN11A1L157 253 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 CACNB4O00305 520 aaPredicted RBP14.84□□□□□ -0.03
VPS28-215ENST00000531924 BUB1BO60566 1050 aaPredicted RBP14.84□□□□□ -0.03
VPS28-215ENST00000531924 DXOO77932 396 aaKnown RBP14.84□□□□□ -0.03
VPS28-215ENST00000531924 TNFP01375 233 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 PRKCGP05129 697 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 CSNK1DP48730 415 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 RENBPP51606 427 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 ZNF135P52742 658 aaPredicted RBP14.84□□□□□ -0.03
VPS28-215ENST00000531924 TMPRSS3P57727 454 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 SRP54P61011 504 aaKnown RBP14.84□□□□□ -0.03
VPS28-215ENST00000531924 KLHL30Q0D2K2 578 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 RFTN1Q14699 578 aaPredicted RBP14.84□□□□□ -0.03
VPS28-215ENST00000531924 CA9Q16790 459 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 LVRNQ6Q4G3 990 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 PSTKQ8IV42 348 aaKnown RBP14.84□□□□□ -0.03
VPS28-215ENST00000531924 SDR16C5Q8N3Y7 309 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 ARL14Q8N4G2 192 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 ARL10Q8N8L6 244 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 TSEN2Q8NCE0 465 aaKnown RBP14.84□□□□□ -0.03
VPS28-215ENST00000531924 SLC39A7Q92504 469 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 ZNF653Q96CK0 615 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 WDR92Q96MX6 357 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 CCDC3Q9BQI4 270 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 APOOQ9BUR5 198 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 SNRNP25Q9BV90 132 aaKnown RBP14.84□□□□□ -0.03
VPS28-215ENST00000531924 EDEM3Q9BZQ6 932 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 CLPBQ9H078 707 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 HSD3B7Q9H2F3 369 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 HAUS4Q9H6D7 363 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 ZWILCHQ9H900 591 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 MRPL47Q9HD33 250 aaKnown RBP14.84□□□□□ -0.03
VPS28-215ENST00000531924 MYO1AQ9UBC5 1043 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 CNOT8Q9UFF9 292 aaKnown RBP14.84□□□□□ -0.03
VPS28-215ENST00000531924 GPR34Q9UPC5 381 aa14.84□□□□□ -0.03
VPS28-215ENST00000531924 TDRD6O60522 2096 aaKnown RBP14.84□□□□□ -0.03
VPS28-215ENST00000531924 LOC400499M0QZD8 3231 aa14.83□□□□□ -0.03
VPS28-215ENST00000531924 TMEM191CA6NGB0 347 aa14.83□□□□□ -0.04
VPS28-215ENST00000531924 H3BRJ5 948 aa14.83□□□□□ -0.04
VPS28-215ENST00000531924 TK2O00142 265 aa14.83□□□□□ -0.04
VPS28-215ENST00000531924 KLK10O43240 276 aa14.83□□□□□ -0.04
VPS28-215ENST00000531924 ELFN1P0C7U0 828 aa14.83□□□□□ -0.04
VPS28-215ENST00000531924 GZMAP12544 262 aa14.83□□□□□ -0.04
VPS28-215ENST00000531924 ERCC2P18074 760 aa14.83□□□□□ -0.04
VPS28-215ENST00000531924 KELP23276 732 aa14.83□□□□□ -0.04
VPS28-215ENST00000531924 MIPP30301 263 aa14.83□□□□□ -0.04
VPS28-215ENST00000531924 MMP12P39900 470 aa14.83□□□□□ -0.04
VPS28-215ENST00000531924 SCNN1BP51168 640 aa14.83□□□□□ -0.04
VPS28-215ENST00000531924 IL10RBQ08334 325 aa14.83□□□□□ -0.04
VPS28-215ENST00000531924 C19orf57Q0VDD7 668 aa14.83□□□□□ -0.04
VPS28-215ENST00000531924 MTM1Q13496 603 aa14.83□□□□□ -0.04
VPS28-215ENST00000531924 ALG11Q2TAA5 492 aa14.83□□□□□ -0.04
VPS28-215ENST00000531924 PERM1Q5SV97 790 aa14.83□□□□□ -0.04
VPS28-215ENST00000531924 LZTR1Q8N653 840 aa14.83□□□□□ -0.04
VPS28-215ENST00000531924 WDR36Q8NI36 951 aaKnown RBP14.83□□□□□ -0.04
VPS28-215ENST00000531924 PCDH19Q8TAB3 1148 aa14.83□□□□□ -0.04
VPS28-215ENST00000531924 CCDC97Q96F63 343 aaPredicted RBP14.83□□□□□ -0.04
VPS28-215ENST00000531924 HIC2Q96JB3 615 aa14.83□□□□□ -0.04
VPS28-215ENST00000531924 KCTD15Q96SI1 283 aaPredicted RBP14.83□□□□□ -0.04
VPS28-215ENST00000531924 WDR70Q9NW82 654 aa14.83□□□□□ -0.04
VPS28-215ENST00000531924 SEPT3Q9UH03 358 aa14.83□□□□□ -0.04
VPS28-215ENST00000531924 MYLKQ15746 1914 aa14.82□□□□□ -0.04
VPS28-215ENST00000531924 FASNP49327 2511 aaKnown RBP14.82□□□□□ -0.04
VPS28-215ENST00000531924 CFAP69A5D8W1 941 aa14.82□□□□□ -0.04
VPS28-215ENST00000531924 TMX2-CTNND1H3BSU7 103 aa14.82□□□□□ -0.04
VPS28-215ENST00000531924 ATXN7O15265 892 aaPredicted RBP14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms