RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 CD68P34810 354 aaPredicted RBP11.74□□□□□ -0.53
CUX1-207ENST00000465461 CETN2P41208 172 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 DPP6P42658 865 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 EIF3EP60228 445 aaKnown RBP11.74□□□□□ -0.53
CUX1-207ENST00000465461 RPS21P63220 83 aaKnown RBP11.74□□□□□ -0.53
CUX1-207ENST00000465461 SKOR1P84550 965 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 RALGDSQ12967 914 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 GRIK2Q13002 908 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 PCSK7Q16549 785 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 KIF19Q2TAC6 998 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 TMEM259Q4ZIN3 620 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 TEX44Q53QW1 395 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 SLC45A4Q5BKX6 768 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 DENND2CQ68D51 928 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 NEK5Q6P3R8 708 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 BRAT1Q6PJG6 821 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 BZW1Q7L1Q6 419 aaKnown RBP11.74□□□□□ -0.53
CUX1-207ENST00000465461 GPR161Q8N6U8 529 aaKnown RBP11.74□□□□□ -0.53
CUX1-207ENST00000465461 SPATA22Q8NHS9 363 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 HCAR2Q8TDS4 363 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 CXorf40AQ8TE69 158 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 HTR3CQ8WXA8 447 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 RAB7BQ96AH8 199 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 QKIQ96PU8 341 aaKnown RBP eCLIP11.74□□□□□ -0.53
CUX1-207ENST00000465461 TLR10Q9BXR5 811 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 SLC17A9Q9BYT1 436 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 SUSD2Q9UGT4 822 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 EFR3BQ9Y2G0 817 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 SNX11Q9Y5W9 270 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 PCDH15Q96QU1 1955 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 PI4KAP42356 2102 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 FAM186AA6NE01 2351 aa11.74□□□□□ -0.53
CUX1-207ENST00000465461 RIF1Q5UIP0 2472 aaKnown RBP11.74□□□□□ -0.53
CUX1-207ENST00000465461 A0A1W2PR77 199 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 ARHGAP33O14559 1287 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 FZD6O60353 706 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 MT-CYBP00156 380 aaPredicted RBP11.73□□□□□ -0.53
CUX1-207ENST00000465461 PRLP01236 227 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 RBP3P10745 1247 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 NFKB1P19838 968 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 PTPRZ1P23471 2315 aaPredicted RBP11.73□□□□□ -0.53
CUX1-207ENST00000465461 HOXD12P35452 270 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 LIG3P49916 1009 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 AFF3P51826 1226 aaKnown RBP11.73□□□□□ -0.53
CUX1-207ENST00000465461 RACK1P63244 317 aaKnown RBP11.73□□□□□ -0.53
CUX1-207ENST00000465461 LMNB2Q03252 620 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 CCDC173Q0VFZ6 552 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 SGCGQ13326 291 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 KLF1Q13351 362 aaPredicted RBP11.73□□□□□ -0.53
CUX1-207ENST00000465461 KCTD19Q17RG1 926 aaPredicted RBP11.73□□□□□ -0.53
CUX1-207ENST00000465461 RSPO4Q2I0M5 234 aaPredicted RBP11.73□□□□□ -0.53
CUX1-207ENST00000465461 UAP1L1Q3KQV9 507 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 TMEM52BQ4KMG9 183 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 SETMARQ53H47 684 aaPredicted RBP11.73□□□□□ -0.53
CUX1-207ENST00000465461 ZNF569Q5MCW4 686 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 ARMC12Q5T9G4 340 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 SEL1L2Q5TEA6 688 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 ALG1LQ6GMV1 187 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 NAPEPLDQ6IQ20 393 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 KIAA1161Q6NSJ0 714 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 ERAP2Q6P179 960 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 DARS2Q6PI48 645 aaKnown RBP11.73□□□□□ -0.53
CUX1-207ENST00000465461 PID1Q7Z2X4 250 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 ZNF567Q8N184 647 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 LPCAT1Q8NF37 534 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 TRIM58Q8NG06 486 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 PIH1D2Q8WWB5 315 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 ATG4AQ8WYN0 398 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 TEKT5Q96M29 485 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 C1QTNF2Q9BXJ5 285 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 TDRD1Q9BXT4 1180 aaKnown RBP11.73□□□□□ -0.53
CUX1-207ENST00000465461 BRD8Q9H0E9 1235 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 GLOD4Q9HC38 313 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 MBNL1Q9NR56 388 aaKnown RBP11.73□□□□□ -0.53
CUX1-207ENST00000465461 KLHL8Q9P2G9 620 aaPredicted RBP11.73□□□□□ -0.53
CUX1-207ENST00000465461 B4GALT6Q9UBX8 382 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 ANKRD6Q9Y2G4 727 aa11.73□□□□□ -0.53
CUX1-207ENST00000465461 LRRK1Q38SD2 2015 aa11.72□□□□□ -0.53
CUX1-207ENST00000465461 TRPM6Q9BX84 2022 aa11.72□□□□□ -0.53
CUX1-207ENST00000465461 POM121BA6NF01 834 aa11.72□□□□□ -0.53
CUX1-207ENST00000465461 NPIPB15A6NHN6 443 aaPredicted RBP11.72□□□□□ -0.53
CUX1-207ENST00000465461 HACD1B0YJ81 288 aa11.72□□□□□ -0.53
CUX1-207ENST00000465461 PRR5-ARHGAP8B1AHC4 643 aa11.72□□□□□ -0.53
CUX1-207ENST00000465461 PRAMEF26H0Y7S4 382 aa11.72□□□□□ -0.53
CUX1-207ENST00000465461 KCNN4O15554 427 aa11.72□□□□□ -0.53
CUX1-207ENST00000465461 ZSCAN12O43309 604 aa11.72□□□□□ -0.53
CUX1-207ENST00000465461 SOCS5O75159 536 aa11.72□□□□□ -0.53
CUX1-207ENST00000465461 TM7SF2O76062 418 aa11.72□□□□□ -0.53
CUX1-207ENST00000465461 C6P13671 934 aa11.72□□□□□ -0.53
CUX1-207ENST00000465461 HNRNPA2B1P22626 353 aaKnown RBP11.72□□□□□ -0.53
CUX1-207ENST00000465461 CD38P28907 300 aa11.72□□□□□ -0.53
CUX1-207ENST00000465461 MMP12P39900 470 aa11.72□□□□□ -0.53
CUX1-207ENST00000465461 ATXN3P54252 364 aaPredicted RBP11.72□□□□□ -0.53
CUX1-207ENST00000465461 C21orf59P57076 290 aa11.72□□□□□ -0.53
CUX1-207ENST00000465461 POLR2LP62875 67 aaKnown RBP11.72□□□□□ -0.53
CUX1-207ENST00000465461 IL9RQ01113 521 aa11.72□□□□□ -0.53
CUX1-207ENST00000465461 ELP6Q0PNE2 266 aa11.72□□□□□ -0.53
CUX1-207ENST00000465461 XRCC4Q13426 336 aa11.72□□□□□ -0.53
CUX1-207ENST00000465461 GALNT3Q14435 633 aa11.72□□□□□ -0.53
CUX1-207ENST00000465461 STAT4Q14765 748 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms