RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-206	ENST00000441089	ZNF500	O60304	480 aa	Predicted RBP	4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	BEST1	O76090	585 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	GJB6	O95452	261 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	VNN2	O95498	520 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	FTL	P02792	175 aa	Predicted RBP	4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	CCDC175	P0C221	793 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	OR4Q2	P0C623	313 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	ODC1	P11926	461 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	CCDC130	P13994	396 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	TCF3	P15923	654 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	PTPN1	P18031	435 aa	Known RBP	4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	TYMP	P19971	482 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	ADORA2B	P29275	332 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	OXTR	P30559	389 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	GPD2	P43304	727 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	CSNK1E	P49674	416 aa	Known RBP	4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	CACNA2D1	P54289	1103 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	RP1	P56715	2156 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	EGR3	Q06889	387 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	DNAJC3	Q13217	504 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	CNGA2	Q16280	664 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	GOLGA7B	Q2TAP0	167 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	LINC00303	Q3SY05	128 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	PTPN20	Q4JDL3	420 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	C2CD6	Q53TS8	623 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	MDH1B	Q5I0G3	518 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	DCAF12L1	Q5VU92	463 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	TXNDC8	Q6A555	127 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	OVOS1	Q6IE37	1185 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	ACAD10	Q6JQN1	1059 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	FAM171B	Q6P995	826 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	LCLAT1	Q6UWP7	414 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	KDM7A	Q6ZMT4	941 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	MMS22L	Q6ZRQ5	1243 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	ZNF662	Q6ZS27	426 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	USP53	Q70EK8	1073 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	MON1B	Q7L1V2	547 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	PHLDB2	Q86SQ0	1253 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	ZC3H18	Q86VM9	953 aa	Known RBP	4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	TSPYL5	Q86VY4	417 aa	Predicted RBP	4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	ZNF677	Q86XU0	584 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	FUK	Q8N0W3	1084 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	TMEM86A	Q8N2M4	240 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	ATAD1	Q8NBU5	361 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	B3GALNT2	Q8NCR0	500 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	ZMIZ2	Q8NF64	920 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	UBA3	Q8TBC4	463 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	CPA5	Q8WXQ8	436 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	TOE1	Q96GM8	510 aa	Known RBP	4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	VCPIP1	Q96JH7	1222 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	CCDC74B	Q96LY2	380 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	CCNL2	Q96S94	520 aa	Predicted RBP	4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	SEPT5	Q99719	369 aa	Predicted RBP	4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	B3GNT5	Q9BYG0	378 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	ZNF518B	Q9C0D4	1074 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	EPN3	Q9H201	632 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	LHX5	Q9H2C1	402 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	POLR1B	Q9H9Y6	1135 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	LZTFL1	Q9NQ48	299 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	WSB2	Q9NYS7	404 aa	Predicted RBP	4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	UXT	Q9UBK9	157 aa	Predicted RBP	4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	KLHL3	Q9UH77	587 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	CHORDC1	Q9UHD1	332 aa	Predicted RBP	4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	EIF2B4	Q9UI10	523 aa	Known RBP	4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	ANAPC2	Q9UJX6	822 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	TSPAN16	Q9UKR8	245 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	CDH9	Q9ULB4	789 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	ANKRD6	Q9Y2G4	727 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	ATP8B3	O60423	1300 aa		4.93	□□□□□ -1.62
PTPN4-206	ENST00000441089	PKDREJ	Q9NTG1	2253 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089		A0A1B0GTQ1	180 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089		A0A1W2PQF6	199 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	TBC1D3B	A6NDS4	549 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	ANTXRL	A6NF34	631 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	SLC22A31	A6NKX4	558 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	HHLA1	C9JL84	531 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089		H0Y8X5	98 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	ZSCAN12	O43309	604 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	MED7	O43513	233 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	BUB1	O43683	1085 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	RTN2	O75298	545 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	SOAT2	O75908	522 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	AGFG2	O95081	481 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	MOCS3	O95396	460 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	LSM8	O95777	96 aa	Known RBP	4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	MT-CO3	P00414	261 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	ERBB2	P04626	1255 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	CYP17A1	P05093	508 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	MPO	P05164	745 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	CYP1A2	P05177	515 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	ITGAV	P06756	1048 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	CELA3B	P08861	270 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	H2AFZ	P0C0S5	128 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	CSH1	P0DML2	217 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	CSH2	P0DML3	217 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	GZMA	P12544	262 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	ATF6	P18850	670 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	ABCB4	P21439	1286 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	MMP8	P22894	467 aa		4.92	□□□□□ -1.62
PTPN4-206	ENST00000441089	PAX3	P23760	479 aa		4.92	□□□□□ -1.62

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