RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 PRNPP04156 253 aa23.15■■□□□ 1.3
CPSF4-204ENST00000436336 CTSLP07711 333 aa23.15■■□□□ 1.3
CPSF4-204ENST00000436336 ABHD2P08910 425 aa23.15■■□□□ 1.3
CPSF4-204ENST00000436336 SSTR1P30872 391 aa23.15■■□□□ 1.3
CPSF4-204ENST00000436336 PHBP35232 272 aa23.15■■□□□ 1.3
CPSF4-204ENST00000436336 GPX6P59796 221 aa23.15■■□□□ 1.3
CPSF4-204ENST00000436336 MRPS21P82921 87 aaKnown RBP23.15■■□□□ 1.3
CPSF4-204ENST00000436336 PRKCQQ04759 706 aa23.15■■□□□ 1.3
CPSF4-204ENST00000436336 FBXO43Q4G163 708 aa23.15■■□□□ 1.3
CPSF4-204ENST00000436336 ARSIQ5FYB1 569 aa23.15■■□□□ 1.3
CPSF4-204ENST00000436336 CFAP58Q5T655 872 aa23.15■■□□□ 1.3
CPSF4-204ENST00000436336 STK40Q8N2I9 435 aa23.15■■□□□ 1.3
CPSF4-204ENST00000436336 CFAP36Q96G28 342 aa23.15■■□□□ 1.3
CPSF4-204ENST00000436336 KLHL32Q96NJ5 620 aa23.15■■□□□ 1.3
CPSF4-204ENST00000436336 KIFC1Q9BW19 673 aa23.15■■□□□ 1.3
CPSF4-204ENST00000436336 VPS37BQ9H9H4 285 aa23.15■■□□□ 1.3
CPSF4-204ENST00000436336 MRM3Q9HC36 420 aaKnown RBP23.15■■□□□ 1.3
CPSF4-204ENST00000436336 TCAF1Q9Y4C2 921 aa23.15■■□□□ 1.3
CPSF4-204ENST00000436336 HEATR9A2RTY3 570 aa23.14■■□□□ 1.3
CPSF4-204ENST00000436336 POLBP06746 335 aa23.14■■□□□ 1.3
CPSF4-204ENST00000436336 SDE2Q6IQ49 451 aa23.14■■□□□ 1.3
CPSF4-204ENST00000436336 UNC5AQ6ZN44 842 aa23.14■■□□□ 1.3
CPSF4-204ENST00000436336 C3orf62Q6ZUJ4 267 aa23.14■■□□□ 1.3
CPSF4-204ENST00000436336 TRMT11Q7Z4G4 463 aaKnown RBP23.14■■□□□ 1.3
CPSF4-204ENST00000436336 TMIEQ8NEW7 156 aa23.14■■□□□ 1.3
CPSF4-204ENST00000436336 HCAR2Q8TDS4 363 aa23.14■■□□□ 1.3
CPSF4-204ENST00000436336 VIPAS39Q9H9C1 493 aa23.14■■□□□ 1.3
CPSF4-204ENST00000436336 PRSS16Q9NQE7 514 aa23.14■■□□□ 1.3
CPSF4-204ENST00000436336 PHTF1Q9UMS5 762 aa23.14■■□□□ 1.3
CPSF4-204ENST00000436336 USP1O94782 785 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 NUDT17P0C025 328 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 NTSR1P30989 418 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 SLC8A1P32418 973 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 LAMB3Q13751 1172 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 C2orf27AQ580R0 203 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 STEAP4Q687X5 459 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 PKN3Q6P5Z2 889 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 BRAT1Q6PJG6 821 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 CAPN12Q6ZSI9 719 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 TMEM135Q86UB9 458 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 IQCKQ8N0W5 287 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 NDUFAF2Q8N183 169 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 BRSK1Q8TDC3 778 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 BLOC1S5Q8TDH9 187 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 CHRAC1Q9NRG0 131 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 WNT16Q9UBV4 365 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 RPS6KL1Q9Y6S9 549 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 A0A087WUV0 522 aaPredicted RBP23.13■■□□□ 1.29
CPSF4-204ENST00000436336 TSPAN11A1L157 253 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 MAP2K7O14733 419 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 ATP8B1O43520 1251 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 WASP42768 502 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 POLR2LP62875 67 aaKnown RBP23.13■■□□□ 1.29
CPSF4-204ENST00000436336 CCINQ13939 588 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 SPANXN3Q5MJ09 141 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 ZNF852Q6ZMS4 543 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 DSG4Q86SJ6 1040 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 ZSWIM9Q86XI8 627 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 GSDMBQ8TAX9 411 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 SRPK1Q96SB4 655 aaKnown RBP23.13■■□□□ 1.29
CPSF4-204ENST00000436336 FAM129BQ96TA1 746 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 GABRG3Q99928 467 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 TRIM56Q9BRZ2 755 aaKnown RBP23.13■■□□□ 1.29
CPSF4-204ENST00000436336 PLAC1Q9HBJ0 212 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 ARHGEF3Q9NR81 526 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 HACD3Q9P035 362 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 DKK3Q9UBP4 350 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 PPM1HQ9ULR3 514 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 CA14Q9ULX7 337 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 PPIL1Q9Y3C6 166 aa23.13■■□□□ 1.29
CPSF4-204ENST00000436336 A0A0J9YYE9 177 aa23.12■■□□□ 1.29
CPSF4-204ENST00000436336 TRBC1P01850 177 aa23.12■■□□□ 1.29
CPSF4-204ENST00000436336 BMP1P13497 986 aa23.12■■□□□ 1.29
CPSF4-204ENST00000436336 CAMK2GQ13555 558 aaPredicted RBP23.12■■□□□ 1.29
CPSF4-204ENST00000436336 SEPT6Q14141 434 aa23.12■■□□□ 1.29
CPSF4-204ENST00000436336 ZNF805Q5CZA5 627 aa23.12■■□□□ 1.29
CPSF4-204ENST00000436336 ALS2CLQ60I27 953 aa23.12■■□□□ 1.29
CPSF4-204ENST00000436336 IL17RCQ8NAC3 791 aa23.12■■□□□ 1.29
CPSF4-204ENST00000436336 MAGEE1Q9HCI5 957 aa23.12■■□□□ 1.29
CPSF4-204ENST00000436336 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP23.12■■□□□ 1.29
CPSF4-204ENST00000436336 PLAAQ9Y263 795 aa23.12■■□□□ 1.29
CPSF4-204ENST00000436336 SCN8AQ9UQD0 1980 aa23.11■■□□□ 1.29
CPSF4-204ENST00000436336 PRKCGP05129 697 aa23.11■■□□□ 1.29
CPSF4-204ENST00000436336 PIRTP0C851 137 aa23.11■■□□□ 1.29
CPSF4-204ENST00000436336 CD72P21854 359 aa23.11■■□□□ 1.29
CPSF4-204ENST00000436336 CRYMQ14894 314 aa23.11■■□□□ 1.29
CPSF4-204ENST00000436336 ANKRD20A4Q4UJ75 823 aa23.11■■□□□ 1.29
CPSF4-204ENST00000436336 NLRP9Q7RTR0 991 aa23.11■■□□□ 1.29
CPSF4-204ENST00000436336 UHMK1Q8TAS1 419 aaKnown RBP23.11■■□□□ 1.29
CPSF4-204ENST00000436336 PIP4K2CQ8TBX8 421 aa23.11■■□□□ 1.29
CPSF4-204ENST00000436336 ZNF669Q96BR6 464 aaPredicted RBP23.11■■□□□ 1.29
CPSF4-204ENST00000436336 TRABDQ9H4I3 376 aa23.11■■□□□ 1.29
CPSF4-204ENST00000436336 SPO11Q9Y5K1 396 aa23.11■■□□□ 1.29
CPSF4-204ENST00000436336 MROH6A6NGR9 719 aa23.11■■□□□ 1.29
CPSF4-204ENST00000436336 LDB2O43679 373 aa23.11■■□□□ 1.29
CPSF4-204ENST00000436336 SYNCRIPO60506 623 aaKnown RBP23.11■■□□□ 1.29
CPSF4-204ENST00000436336 PAPSS2O95340 614 aaPredicted RBP23.11■■□□□ 1.29
CPSF4-204ENST00000436336 CRTAMO95727 393 aa23.11■■□□□ 1.29
CPSF4-204ENST00000436336 HSF5Q4G112 596 aaPredicted RBP23.11■■□□□ 1.29
CPSF4-204ENST00000436336 GLT6D1Q7Z4J2 308 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms