RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 HDAC8Q9BY41 377 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 GPR63Q9BZJ6 419 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 MTG2Q9H4K7 406 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 RAD18Q9NS91 495 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 FBXL12Q9NXK8 326 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.16□□□□□ -0.78
CD44-207ENST00000425428 DMGDHQ9UI17 866 aaKnown RBP10.16□□□□□ -0.78
CD44-207ENST00000425428 PKP3Q9Y446 797 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 MTF2Q9Y483 593 aaPredicted RBP10.16□□□□□ -0.78
CD44-207ENST00000425428 MAD1L1Q9Y6D9 718 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 WASF2Q9Y6W5 498 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 V9GYY5 206 aaPredicted RBP10.16□□□□□ -0.78
CD44-207ENST00000425428 LOC285095A0A1B0GVY8 99 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 HEATR9A2RTY3 570 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 MID1O15344 667 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 SLC7A4O43246 635 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 LAMTOR5O43504 91 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 ADAM23O75077 832 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 DCNP07585 359 aaKnown RBP10.16□□□□□ -0.78
CD44-207ENST00000425428 AOC1P19801 751 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 GKP32189 559 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 SESN2P58004 480 aaPredicted RBP10.16□□□□□ -0.78
CD44-207ENST00000425428 RPS14P62263 151 aaKnown RBP10.16□□□□□ -0.78
CD44-207ENST00000425428 SEPT6Q14141 434 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 UGP2Q16851 508 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 POM121L1PQ3SYA9 428 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 SIRPB2Q5JXA9 342 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 ZDHHC20Q5W0Z9 365 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 Q6ZS52 159 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 USP30Q70CQ3 517 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 GLT6D1Q7Z4J2 308 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 CACUL1Q86Y37 369 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 PALM2Q8IXS6 379 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 MYRIPQ8NFW9 859 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 BLOC1S5Q8TDH9 187 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 CXorf40AQ8TE69 158 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 PTCD2Q8WV60 388 aaKnown RBP10.16□□□□□ -0.78
CD44-207ENST00000425428 SEC14L1Q92503 715 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 ART4Q93070 314 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 ERLEC1Q96DZ1 483 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 FAM129BQ96TA1 746 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 HINFPQ9BQA5 517 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 APOL2Q9BQE5 337 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 PHACTR1Q9C0D0 580 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 PABPC3Q9H361 631 aaKnown RBP10.16□□□□□ -0.78
CD44-207ENST00000425428 ARNT2Q9HBZ2 717 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 MAGEE1Q9HCI5 957 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 GDF3Q9NR23 364 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 KCTD5Q9NXV2 234 aa10.16□□□□□ -0.78
CD44-207ENST00000425428 LRRC72A6NJI9 287 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 TSPAN6O43657 245 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 USP12O75317 370 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 PCDH8O95206 1070 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 ZNF30P17039 623 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 ADRA1DP25100 572 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 TNFRSF8P28908 595 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 PHBP35232 272 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 SKIDA1Q1XH10 827 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 BBS9Q3SYG4 887 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 PCID2Q5JVF3 399 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 KCTD11Q693B1 232 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 ANO7Q6IWH7 933 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 WDR93Q6P2C0 686 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 RANBP10Q6VN20 620 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.15□□□□□ -0.78
CD44-207ENST00000425428 BRSK1Q8TDC3 778 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 PYROXD1Q8WU10 500 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 TADA1Q96BN2 335 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 SCRN2Q96FV2 425 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 ZNF419Q96HQ0 510 aaPredicted RBP10.15□□□□□ -0.78
CD44-207ENST00000425428 TTC25Q96NG3 672 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 SERPINB12Q96P63 405 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 C1QTNF7Q9BXJ2 289 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 CASS4Q9NQ75 786 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.15□□□□□ -0.78
CD44-207ENST00000425428 PKD2L2Q9NZM6 624 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 FZD4Q9ULV1 537 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 NFU1Q9UMS0 254 aa10.15□□□□□ -0.78
CD44-207ENST00000425428 A0A0J9YYE9 177 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 C1orf232A0A0U1RR37 186 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 A0A1W2PP55 124 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 A0A1W2PQF6 199 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 TNFRSF10AO00220 468 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 TRAFD1O14545 582 aaPredicted RBP10.14□□□□□ -0.79
CD44-207ENST00000425428 PFDN6O15212 129 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 STX7O15400 261 aaKnown RBP10.14□□□□□ -0.79
CD44-207ENST00000425428 NDUFS2O75306 463 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 TTC4O95801 387 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 TRBC1P01850 177 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 POLBP06746 335 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 CTSLP07711 333 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 ELFN1P0C7U0 828 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 ADRB3P13945 408 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 IVDP26440 423 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 VIPR1P32241 457 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 ADRA1AP35348 466 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 HADHAP40939 763 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 PDIA2Q13087 525 aaKnown RBP10.14□□□□□ -0.79
CD44-207ENST00000425428 MTAPQ13126 283 aa10.14□□□□□ -0.79
CD44-207ENST00000425428 POU6F1Q14863 301 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms