RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 ARCQ7LC44 396 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 SLFN11Q7Z7L1 901 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 JPH3Q8WXH2 748 aaPredicted RBP8.17□□□□□ -1.1
VIM-202ENST00000421459 GRAMD1AQ96CP6 724 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 CCDC97Q96F63 343 aaPredicted RBP8.17□□□□□ -1.1
VIM-202ENST00000421459 LIN37Q96GY3 246 aaPredicted RBP8.17□□□□□ -1.1
VIM-202ENST00000421459 CELF6Q96J87 481 aaKnown RBP8.17□□□□□ -1.1
VIM-202ENST00000421459 NSMCE3Q96MG7 304 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 LGR4Q9BXB1 951 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 VPS16Q9H269 839 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 LRRN3Q9H3W5 708 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 SUDS3Q9H7L9 328 aaPredicted RBP8.17□□□□□ -1.1
VIM-202ENST00000421459 FOXJ2Q9P0K8 574 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 KLQ9UEF7 1012 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 MFHAS1Q9Y4C4 1052 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 DAAM1Q9Y4D1 1078 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 LOXL2Q9Y4K0 774 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 RNF215Q9Y6U7 377 aa8.17□□□□□ -1.1
VIM-202ENST00000421459 SPENQ96T58 3664 aaKnown RBP8.16□□□□□ -1.1
VIM-202ENST00000421459 B4DGG1 531 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 RIOK3O14730 519 aaKnown RBP8.16□□□□□ -1.1
VIM-202ENST00000421459 ARHGAP6O43182 974 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 CCP110O43303 1012 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 RASGRP1O95267 797 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 TNFP01375 233 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 KRT3P12035 628 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 UNGP13051 313 aaPredicted RBP8.16□□□□□ -1.1
VIM-202ENST00000421459 GM2AP17900 193 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 GPD1P21695 349 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 XPAP23025 273 aaPredicted RBP8.16□□□□□ -1.1
VIM-202ENST00000421459 PTPN9P43378 593 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 MAPK10P53779 464 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 GEMIN4P57678 1058 aaKnown RBP8.16□□□□□ -1.1
VIM-202ENST00000421459 UBE2HP62256 183 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 RPL7AP62424 266 aaKnown RBP8.16□□□□□ -1.1
VIM-202ENST00000421459 RAD51Q06609 339 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 NFATC4Q14934 902 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 PTPRRQ15256 657 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 CA9Q16790 459 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 UGP2Q16851 508 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 TCP11X2Q5H9J9 407 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 ARHGAP36Q6ZRI8 547 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 USP53Q70EK8 1073 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 STRADAQ7RTN6 431 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 TAF8Q7Z7C8 310 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 ZSCAN30Q86W11 494 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 DNAAF5Q86Y56 855 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 CCNJLQ8IV13 435 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 TP53INP2Q8IXH6 220 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 FSTL5Q8N475 847 aaPredicted RBP8.16□□□□□ -1.1
VIM-202ENST00000421459 RTL3Q8N8U3 475 aaKnown RBP8.16□□□□□ -1.1
VIM-202ENST00000421459 MSANTD4Q8NCY6 345 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 FAM46DQ8NEK8 389 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 GPR156Q8NFN8 814 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 PTCD2Q8WV60 388 aaKnown RBP8.16□□□□□ -1.1
VIM-202ENST00000421459 HTR3CQ8WXA8 447 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 SCG3Q8WXD2 468 aaKnown RBP8.16□□□□□ -1.1
VIM-202ENST00000421459 USP7Q93009 1102 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 PMEPA1Q969W9 287 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 ARHGEF26Q96DR7 871 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 TBATAQ96M53 351 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 WDR92Q96MX6 357 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 RBM15Q96T37 977 aaKnown RBP eCLIP8.16□□□□□ -1.12e-11■■□□□ 14.4
VIM-202ENST00000421459 NCAPGQ9BPX3 1015 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 C1QTNF7Q9BXJ2 289 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 SLC39A8Q9C0K1 460 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 TMEM168Q9H0V1 697 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 SEMA6CQ9H3T2 930 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 SUV39H2Q9H5I1 410 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 FGF22Q9HCT0 170 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 FAM207AQ9NSI2 230 aaPredicted RBP8.16□□□□□ -1.1
VIM-202ENST00000421459 SPATS2LQ9NUQ6 558 aaKnown RBP8.16□□□□□ -1.1
VIM-202ENST00000421459 ADAM22Q9P0K1 906 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 DKK3Q9UBP4 350 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 MOSPD1Q9UJG1 213 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 FZD10Q9ULW2 581 aa8.16□□□□□ -1.1
VIM-202ENST00000421459 PIEZO2Q9H5I5 2752 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 A0A0U1RQS6 177 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 CXorf51AA0A1B0GTR3 108 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 TCRBV5S1A1TA0A578 114 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 C9orf172C9J069 976 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 TEX33O43247 280 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 B4GAT1O43505 415 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 RECQL5O94762 991 aaPredicted RBP8.15□□□□□ -1.1
VIM-202ENST00000421459 FUCA1P04066 466 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 ALPIP09923 528 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 JMJD7P0C870 316 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 CCL4P13236 92 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 ITGB6P18564 788 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 SOX5P35711 763 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 MMP12P39900 470 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 PEX5P50542 639 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 PAPOLAP51003 745 aaKnown RBP8.15□□□□□ -1.1
VIM-202ENST00000421459 BLKP51451 505 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 MAZP56270 477 aaKnown RBP8.15□□□□□ -1.1
VIM-202ENST00000421459 JAM2P57087 298 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 OR1D5P58170 312 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 B4GALNT1Q00973 533 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 OGDHQ02218 1023 aa8.15□□□□□ -1.1
VIM-202ENST00000421459 ZFP36L1Q07352 338 aaKnown RBP8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms