RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 TMEM245Q9H330 911 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 ETNK1Q9HBU6 452 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 XAB2Q9HCS7 855 aaKnown RBP13.56□□□□□ -0.24
LIMS1-204ENST00000409441 RBM22Q9NW64 420 aaKnown RBP eCLIP13.56□□□□□ -0.24
LIMS1-204ENST00000409441 CACNA2D2Q9NY47 1150 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 SEPT10Q9P0V9 454 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 SLC8A2Q9UPR5 921 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 STON1Q9Y6Q2 735 aa13.56□□□□□ -0.24
LIMS1-204ENST00000409441 MIA3Q5JRA6 1907 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 TTC28Q96AY4 2481 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 KIAA1549LQ6ZVL6 1849 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 IQANK1A0A1B0GTG1 560 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 FOXO6A8MYZ6 492 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 ANKRD65E5RJM6 399 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 MTSS1O43312 755 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 SNX3O60493 162 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 STK10O94804 968 aaKnown RBP13.55□□□□□ -0.24
LIMS1-204ENST00000409441 TMCC1O94876 653 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 ZWINTO95229 277 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 KLF8O95600 359 aaPredicted RBP13.55□□□□□ -0.24
LIMS1-204ENST00000409441 ASMTLO95671 621 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 PDGFBP01127 241 aaPredicted RBP13.55□□□□□ -0.24
LIMS1-204ENST00000409441 NTSR1P30989 418 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 MAGEA3P43357 314 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 SEMA5AQ13591 1074 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 ENPP2Q13822 863 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 FAM182AQ5T1J6 154 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 ZNF366Q8N895 744 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 PJA1Q8NG27 643 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 RPLP0P6Q8NHW5 317 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 CCDC110Q8TBZ0 833 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 FRS2Q8WU20 508 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 DCAKDQ8WVC6 231 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 CLDN23Q96B33 292 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 ELAC2Q9BQ52 826 aaKnown RBP13.55□□□□□ -0.24
LIMS1-204ENST00000409441 MTG2Q9H4K7 406 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 SEPT3Q9UH03 358 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 CHD5Q8TDI0 1954 aa13.55□□□□□ -0.24
LIMS1-204ENST00000409441 TMEM221A6NGB7 291 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 CCT8L1PA6NM43 557 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 M0R296 226 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 TYROBPO43914 113 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 ZNF821O75541 412 aaPredicted RBP13.54□□□□□ -0.24
LIMS1-204ENST00000409441 HLA-EP13747 358 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 PRKCHP24723 683 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 PTPN3P26045 913 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 SARNPP82979 210 aaKnown RBP13.54□□□□□ -0.24
LIMS1-204ENST00000409441 WASHC5Q12768 1159 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 TEX44Q53QW1 395 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 Q6ZS52 159 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 TRMT11Q7Z4G4 463 aaKnown RBP13.54□□□□□ -0.24
LIMS1-204ENST00000409441 CAND1Q86VP6 1230 aaKnown RBP13.54□□□□□ -0.24
LIMS1-204ENST00000409441 IGDCC3Q8IVU1 814 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 CNPY4Q8N129 248 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 BBS5Q8N3I7 341 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 TXNDC5Q8NBS9 432 aaKnown RBP13.54□□□□□ -0.24
LIMS1-204ENST00000409441 GDAP1Q8TB36 358 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 MZB1Q8WU39 189 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 SLC44A1Q8WWI5 657 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 ISG20Q96AZ6 181 aaKnown RBP13.54□□□□□ -0.24
LIMS1-204ENST00000409441 SPATA13Q96N96 652 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 PSKH2Q96QS6 385 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 IL12RB2Q99665 862 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 CINPQ9BW66 212 aaPredicted RBP13.54□□□□□ -0.24
LIMS1-204ENST00000409441 CEP41Q9BYV8 373 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 CEP44Q9C0F1 390 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 TNKS2Q9H2K2 1166 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 EIF2B3Q9NR50 452 aaKnown RBP13.54□□□□□ -0.24
LIMS1-204ENST00000409441 SUN2Q9UH99 717 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 IKBKGQ9Y6K9 419 aa13.54□□□□□ -0.24
LIMS1-204ENST00000409441 NYNRINQ9P2P1 1898 aaKnown RBP13.54□□□□□ -0.24
LIMS1-204ENST00000409441 TCRBV9S1A1TA0A576 114 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 RNF103O00237 685 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 TM9SF1O15321 606 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 OPHN1O60890 802 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 ADAM23O75077 832 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 FAM155BO75949 473 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 NEBLO76041 1014 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 SUN1O94901 812 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 EPHX1P07099 455 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 DCNP07585 359 aaKnown RBP13.53□□□□□ -0.24
LIMS1-204ENST00000409441 APRTP07741 180 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 MLNP12872 115 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 TAC1P20366 129 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 WDR4P57081 412 aaKnown RBP13.53□□□□□ -0.24
LIMS1-204ENST00000409441 RHOAP61586 193 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 NSUN2Q08J23 767 aaKnown RBP eCLIP13.53□□□□□ -0.24
LIMS1-204ENST00000409441 ZBTB17Q13105 803 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 ZNF235Q14590 738 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 EFTUD2Q15029 972 aaKnown RBP eCLIP13.53□□□□□ -0.24
LIMS1-204ENST00000409441 HNRNPA1L2Q32P51 320 aaKnown RBP13.53□□□□□ -0.24
LIMS1-204ENST00000409441 HSF5Q4G112 596 aaPredicted RBP13.53□□□□□ -0.24
LIMS1-204ENST00000409441 C22orf39Q6P5X5 142 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 PKN3Q6P5Z2 889 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 PGBD5Q8N414 524 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 PCDH20Q8N6Y1 951 aaKnown RBP13.53□□□□□ -0.24
LIMS1-204ENST00000409441 CNTD1Q8N815 330 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 CCT6BQ92526 530 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 PTPRN2Q92932 1015 aa13.53□□□□□ -0.24
LIMS1-204ENST00000409441 ZNF419Q96HQ0 510 aaPredicted RBP13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms