RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 NFKB1P19838 968 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 ECHS1P30084 290 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 DMWDQ09019 674 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 CCDC137Q6PK04 289 aaKnown RBP7.06□□□□□ -1.28
LIMA1-202ENST00000394943 CCDC50Q8IVM0 306 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 C17orf53Q8N3J3 647 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-202ENST00000394943 GLIS1Q8NBF1 620 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 CPT1BQ92523 772 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 PRCCQ92733 491 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-202ENST00000394943 ART4Q93070 314 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 LRRC39Q96DD0 335 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 FERMT1Q9BQL6 677 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 KIFC1Q9BW19 673 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 TREX1Q9NSU2 369 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 NDRG2Q9UN36 371 aaKnown RBP7.06□□□□□ -1.28
LIMA1-202ENST00000394943 RAI2Q9Y5P3 530 aa7.06□□□□□ -1.28
LIMA1-202ENST00000394943 ANKRD66B4E2M5 251 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 DLL1O00548 723 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 RNASEH1O60930 286 aaKnown RBP7.05□□□□□ -1.28
LIMA1-202ENST00000394943 CPP00450 1065 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 C1QAP02745 245 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 SERPINF2P08697 491 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 CD72P21854 359 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 CD9P21926 228 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 CSRP3P50461 194 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 DSC2Q02487 901 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 CAV1Q03135 178 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 RAD51Q06609 339 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 LAMB3Q13751 1172 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 MORF4L2Q15014 288 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 UGP2Q16851 508 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 ADAMTSL4Q6UY14 1074 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 KANSL1Q7Z3B3 1105 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 DCP2Q8IU60 420 aaKnown RBP7.05□□□□□ -1.28
LIMA1-202ENST00000394943 TMPRSS6Q8IU80 811 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 CNPY4Q8N129 248 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 TSTD1Q8NFU3 115 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 GPR150Q8NGU9 434 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 KIF18AQ8NI77 898 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 EID2BQ96D98 161 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 RPL10LQ96L21 214 aaKnown RBP7.05□□□□□ -1.28
LIMA1-202ENST00000394943 CIPCQ9C0C6 399 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 ZDHHC18Q9NUE0 388 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 SERGEFQ9UGK8 458 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 GOLGA6L10A0A0M3HER8 536 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 FAM170AA1A519 330 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 ESPNB1AK53 854 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 HRO43593 1189 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 FAM155BO75949 473 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 STK10O94804 968 aaKnown RBP7.05□□□□□ -1.28
LIMA1-202ENST00000394943 JCHAINP01591 159 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 ZNF883P0CG24 379 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 SLC8A1P32418 973 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 NPY2RP49146 381 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 SEC13P55735 322 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 KIAA1024LP59773 190 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 PFN3P60673 137 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 CDK18Q07002 472 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 BCL2L1Q07817 233 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 CNTN1Q12860 1018 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 OVGP1Q12889 678 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 ZNF235Q14590 738 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 PLK5Q496M5 336 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 ARSIQ5FYB1 569 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 DARS2Q6PI48 645 aaKnown RBP7.05□□□□□ -1.28
LIMA1-202ENST00000394943 KYAT3Q6YP21 454 aaKnown RBP7.05□□□□□ -1.28
LIMA1-202ENST00000394943 RABEPKQ7Z6M1 372 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 CHPFQ8IZ52 775 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 CEP112Q8N8E3 955 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 SEMA3CQ99985 751 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 TMEM121Q9BTD3 319 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 TEX101Q9BY14 249 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 PLAC1Q9HBJ0 212 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 HEY1Q9Y5J3 304 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 GPR89AB7ZAQ6 455 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 MID1O15344 667 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 KCNN4O15554 427 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 LAMTOR5O43504 91 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 SYNCRIPO60506 623 aaKnown RBP7.05□□□□□ -1.28
LIMA1-202ENST00000394943 GSTA2P09210 222 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 GPR89BP0CG08 455 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 HLA-EP13747 358 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 TNNT1P13805 278 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 HMGCLP35914 325 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 PDE1BQ01064 536 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 PTSQ03393 145 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 AP1B1Q10567 949 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 TAF1AQ15573 450 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-202ENST00000394943 ZNF423Q2M1K9 1284 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 TTC31Q49AM3 519 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-202ENST00000394943 HENMT1Q5T8I9 393 aaKnown RBP7.05□□□□□ -1.28
LIMA1-202ENST00000394943 KAZNQ674X7 775 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 CAND1Q86VP6 1230 aaKnown RBP7.05□□□□□ -1.28
LIMA1-202ENST00000394943 CNTN4Q8IWV2 1026 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 CCDC89Q8N998 374 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 ATG4AQ8WYN0 398 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 SIPA1Q96FS4 1042 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 NEUROG2Q9H2A3 272 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 NT5MQ9NPB1 228 aa7.05□□□□□ -1.28
LIMA1-202ENST00000394943 PILRBQ9UKJ0 227 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms