RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 FGFBP2Q9BYJ0 223 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 OSBPL6Q9BZF3 934 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 CDH19Q9H159 772 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 FANCEQ9HB96 536 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 ARL8BQ9NVJ2 186 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 GNPTGQ9UJJ9 305 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 PSMD13Q9UNM6 376 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 B4GALT5O43286 388 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 B4GALT4O60513 344 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 KLRC2P26717 231 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 ADRA1BP35368 520 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 CRATP43155 626 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 AIF1P55008 147 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 BEX3Q00994 111 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 EVX2Q03828 476 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 GNA13Q14344 377 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 TXNDC11Q6PKC3 985 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 OFCC1Q8IZS5 231 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 NKX2-3Q8TAU0 364 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 FAM84AQ96KN4 292 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 CAPNS2Q96L46 248 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 IKZF4Q9H2S9 585 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 KLHL1Q9NR64 748 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 ATP6V1HQ9UI12 483 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 CICQ96RK0 1608 aaPredicted RBP11.49□□□□□ -0.57
PTPRF-203ENST00000372407 ATXN2Q99700 1313 aaKnown RBP11.49□□□□□ -0.57
PTPRF-203ENST00000372407 FGF1P05230 155 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 SLURP2P0DP57 97 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 IDO1P14902 403 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 RPL9P32969 192 aaKnown RBP11.49□□□□□ -0.57
PTPRF-203ENST00000372407 SNRPD1P62314 119 aaKnown RBP11.49□□□□□ -0.57
PTPRF-203ENST00000372407 FOLH1Q04609 750 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 KLF10Q13118 480 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 METTL21CQ5VZV1 264 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 LLGL2Q6P1M3 1020 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 TATDN1Q6P1N9 297 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 SCIMPQ6UWF3 145 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 MTFMTQ96DP5 389 aaKnown RBP11.49□□□□□ -0.57
PTPRF-203ENST00000372407 NLNQ9BYT8 704 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 SPG21Q9NZD8 308 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 DNMT3LQ9UJW3 386 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 SLC12A4Q9UP95 1085 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 BTRCQ9Y297 605 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 TBC1D30Q9Y2I9 924 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 LRRC37A3O60309 1634 aa11.49□□□□□ -0.57
PTPRF-203ENST00000372407 NRP2O60462 931 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 SEC24AO95486 1093 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 IL6P05231 212 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 TNNI3P19429 210 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 RPL38P63173 70 aaKnown RBP11.48□□□□□ -0.57
PTPRF-203ENST00000372407 SP3Q02447 781 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 SLC9A5Q14940 896 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 SLC25A52Q3SY17 297 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 BRMS1LQ5PSV4 323 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 ARMC3Q5W041 872 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 LCLAT1Q6UWP7 414 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 ZNF513Q8N8E2 541 aaPredicted RBP11.48□□□□□ -0.57
PTPRF-203ENST00000372407 TM6SF2Q9BZW4 377 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 PLGRKTQ9HBL7 147 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 TRAF6Q9Y4K3 522 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 ABLIM1O14639 778 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 PIRTP0C851 137 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 SNHG28P0DPA3 235 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 ARF4P18085 180 aaPredicted RBP11.48□□□□□ -0.57
PTPRF-203ENST00000372407 CRHR1P34998 444 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 ABL2P42684 1182 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 ATP12AP54707 1039 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 BNIP1Q12981 228 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 SLC1A5Q15758 541 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 LACTB2Q53H82 288 aaPredicted RBP11.48□□□□□ -0.57
PTPRF-203ENST00000372407 FBXL19Q6PCT2 694 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 CXCL17Q6UXB2 119 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 EIF3MQ7L2H7 374 aaKnown RBP11.48□□□□□ -0.57
PTPRF-203ENST00000372407 REM2Q8IYK8 340 aaPredicted RBP11.48□□□□□ -0.57
PTPRF-203ENST00000372407 UBASH3BQ8TF42 649 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 CD101Q93033 1021 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 DUSP16Q9BY84 665 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 NFKBIZQ9BYH8 718 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 RCOR3Q9P2K3 495 aaPredicted RBP11.48□□□□□ -0.57
PTPRF-203ENST00000372407 PAPSS1O43252 624 aaPredicted RBP11.48□□□□□ -0.57
PTPRF-203ENST00000372407 TPSB2P20231 275 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 CXCR2P25025 360 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 MAXP61244 160 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 SKP1P63208 163 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 TPSAB1Q15661 275 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 DEPDC4Q8N2C3 294 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 LRRC57Q8N9N7 239 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 LRRN4Q8WUT4 740 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 USP7Q93009 1102 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 KLRG1Q96E93 195 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 FCRL2Q96LA5 508 aaPredicted RBP11.48□□□□□ -0.57
PTPRF-203ENST00000372407 UROC1Q96N76 676 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 CPXM1Q96SM3 734 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 RTKNQ9BST9 563 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 CLK4Q9HAZ1 481 aaKnown RBP11.48□□□□□ -0.57
PTPRF-203ENST00000372407 FKTNO75072 461 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 LRCH4O75427 683 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 COL6A2P12110 1019 aa11.48□□□□□ -0.57
PTPRF-203ENST00000372407 RPL3P39023 403 aaKnown RBP11.48□□□□□ -0.57
PTPRF-203ENST00000372407 SPIRE1Q08AE8 756 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms