RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 EPB41L1Q9H4G0 881 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 PDLIM7Q9NR12 457 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 AAASQ9NRG9 546 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 VPS45Q9NRW7 570 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 ZNF358Q9NW07 568 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 SMIM28A0A1B0GU29 152 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 MYOCOSA0A1B0GUC4 107 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 ZNF197O14709 1029 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 IDH3BO43837 385 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 CAPN1P07384 714 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 FAM117BQ6P1L5 589 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 IFNL1Q8IU54 200 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 SVOPQ8N4V2 548 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 TRPC4APQ8TEL6 797 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 GPR88Q9GZN0 384 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 PCDHAC1Q9H158 963 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 PCDH18Q9HCL0 1135 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 ENTPD7Q9NQZ7 604 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 CLUHO75153 1309 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 GLP2RO95838 553 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 F9P00740 461 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 CD52P31358 61 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 THOP1P52888 689 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 HPCAP84074 193 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 NOGQ13253 232 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 DPYSQ14117 519 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 MSS51Q4VC12 460 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 TMEM198Q66K66 360 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 SLCO6A1Q86UG4 719 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 ELMO1Q92556 727 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 UGT2B28Q9BY64 529 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 IL22Q9GZX6 179 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 BTRCQ9Y297 605 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 LRRC37AA6NMS7 1700 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 ZNF846Q147U1 533 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 PITRM1Q5JRX3 1037 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 C9orf57Q5W0N0 161 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 LRRC52Q8N7C0 313 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 DCAKDQ8WVC6 231 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 PHF21AQ96BD5 680 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 ZFP42Q96MM3 310 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 SMAD5Q99717 465 aaKnown RBP15.45■□□□□ 0.06
SHH-201ENST00000297261 SEPT5Q99719 369 aaPredicted RBP15.45■□□□□ 0.06
SHH-201ENST00000297261 SYTL2Q9HCH5 934 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 ADAM28Q9UKQ2 775 aa15.45■□□□□ 0.06
SHH-201ENST00000297261 ITM2AO43736 263 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 DUSP11O75319 330 aaKnown RBP15.44■□□□□ 0.06
SHH-201ENST00000297261 VPS26AO75436 327 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 SLC18A1P54219 525 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 ATN1P54259 1190 aaPredicted RBP15.44■□□□□ 0.06
SHH-201ENST00000297261 PGS1Q32NB8 556 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 CRTC3Q6UUV7 619 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 FRMD7Q6ZUT3 714 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 DCP1BQ8IZD4 617 aaKnown RBP15.44■□□□□ 0.06
SHH-201ENST00000297261 UBR7Q8N806 425 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 ARRDC4Q8NCT1 418 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 SETD9Q8NE22 299 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 ZHX1-C8orf76Q96EF9 292 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 TUBA8Q9NY65 449 aaPredicted RBP15.44■□□□□ 0.06
SHH-201ENST00000297261 POLG2Q9UHN1 485 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 BUD23O43709 281 aaKnown RBP15.44■□□□□ 0.06
SHH-201ENST00000297261 ERBB2P04626 1255 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 NFKB1P19838 968 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 TNK2Q07912 1038 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 DDR2Q16832 855 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 PRR11Q96HE9 360 aaPredicted RBP15.44■□□□□ 0.06
SHH-201ENST00000297261 DPY30Q9C005 99 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 PCDHB7Q9Y5E2 793 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 SNX8Q9Y5X2 465 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 STX16-NPEPL1H3BU86 382 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 J3QRK9 145 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 TOR1BO14657 336 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 TNFRSF21O75509 655 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 TOMM70O94826 608 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 S100A1P23297 94 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 DEFB115Q30KQ5 88 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 MGAT5BQ3V5L5 792 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 FBXL8Q96CD0 374 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 FAM105AQ9NUU6 356 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 DLEC1Q9Y238 1755 aa15.44■□□□□ 0.06
SHH-201ENST00000297261 DNAJC25-GNG10A0A024R161 153 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 PNMA8CA0A1B0GUJ8 204 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 CXorf49A8MYA2 514 aaPredicted RBP15.43■□□□□ 0.06
SHH-201ENST00000297261 C5orf58C9J3I9 102 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 TK2O00142 265 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 SNPHO15079 494 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 IL12RB1P42701 662 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 ASPAP45381 313 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 CERCAMQ5T4B2 595 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 OVOS1Q6IE37 1185 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 XKR5Q6UX68 686 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 PDSS2Q86YH6 399 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 SLC44A2Q8IWA5 706 aaPredicted RBP15.43■□□□□ 0.06
SHH-201ENST00000297261 TRIM63Q969Q1 353 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 P2RY11Q96G91 374 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 GPR63Q9BZJ6 419 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 PCDH12Q9NPG4 1184 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 DNAJC28Q9NX36 388 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 TRHDEQ9UKU6 1024 aa15.43■□□□□ 0.06
SHH-201ENST00000297261 CDH9Q9ULB4 789 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms