RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 MC4RP32245 332 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 POU4F1Q01851 419 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 ZNF783Q6ZMS7 281 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 BBS7Q8IWZ6 715 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 GPR65Q8IYL9 337 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 C12orf76Q8N812 135 aaPredicted RBP11.66□□□□□ -0.54
VPS4A-201ENST00000254950 ZBTB18Q99592 522 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 ADAM7Q9H2U9 754 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 SNX15Q9NRS6 342 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 RPL34P49207 117 aaKnown RBP11.66□□□□□ -0.54
VPS4A-201ENST00000254950 RAB10P61026 200 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 MAP7Q14244 749 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 MSS51Q4VC12 460 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 LY6G5CQ5SRR4 150 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 KIAA0930Q6ICG6 404 aaPredicted RBP11.66□□□□□ -0.54
VPS4A-201ENST00000254950 MARK2Q7KZI7 788 aaKnown RBP11.66□□□□□ -0.54
VPS4A-201ENST00000254950 TRPM8Q7Z2W7 1104 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 EFL1Q7Z2Z2 1120 aaKnown RBP11.66□□□□□ -0.54
VPS4A-201ENST00000254950 RELL1Q8IUW5 271 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 ZNF75CPQ92670 426 aaPredicted RBP11.66□□□□□ -0.54
VPS4A-201ENST00000254950 RTP4Q96DX8 246 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 NKX2-4Q9H2Z4 354 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 IL1RAPL1Q9NZN1 696 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 GGT7Q9UJ14 662 aa11.66□□□□□ -0.54
VPS4A-201ENST00000254950 A0A0G2JMZ2 1700 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 PFKLP17858 780 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 KCNA4P22459 653 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 DMC1Q14565 340 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 DLG2Q15700 870 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 SETMARQ53H47 684 aaPredicted RBP11.65□□□□□ -0.54
VPS4A-201ENST00000254950 LIMS2Q7Z4I7 341 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 MPP5Q8N3R9 675 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 NDNQ99608 321 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 HEPHQ9BQS7 1158 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 ZBP1Q9H171 429 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 A0A0D9SEW6 157 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 GYG2O15488 501 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 SLC7A4O43246 635 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 FAM155BO75949 473 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 EPCAMP16422 314 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 ECT2LQ008S8 904 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 NRG1Q02297 640 aaPredicted RBP11.65□□□□□ -0.54
VPS4A-201ENST00000254950 SGCGQ13326 291 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 STXBP5Q5T5C0 1151 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 MBLAC2Q68D91 279 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 RTL10Q7L3V2 364 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 TP53INP2Q8IXH6 220 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 AZIN2Q96A70 460 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 TLCD1Q96CP7 247 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 ERP27Q96DN0 273 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 OLFM3Q96PB7 478 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 CASS4Q9NQ75 786 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 ZDHHC7Q9NXF8 308 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 DNAJC16Q9Y2G8 782 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 VWA7Q9Y334 891 aa11.65□□□□□ -0.54
VPS4A-201ENST00000254950 MAFKO60675 156 aa11.65□□□□□ -0.55
VPS4A-201ENST00000254950 LTA4HP09960 611 aaKnown RBP11.65□□□□□ -0.55
VPS4A-201ENST00000254950 TYRP14679 529 aa11.65□□□□□ -0.55
VPS4A-201ENST00000254950 IL2P60568 153 aa11.65□□□□□ -0.55
VPS4A-201ENST00000254950 CMC1Q7Z7K0 106 aa11.65□□□□□ -0.55
VPS4A-201ENST00000254950 IRF7Q92985 503 aa11.65□□□□□ -0.55
VPS4A-201ENST00000254950 FAR2Q96K12 515 aa11.65□□□□□ -0.55
VPS4A-201ENST00000254950 SIGLEC10Q96LC7 697 aa11.65□□□□□ -0.55
VPS4A-201ENST00000254950 MRPL46Q9H2W6 279 aaKnown RBP11.65□□□□□ -0.55
VPS4A-201ENST00000254950 UTP6Q9NYH9 597 aaKnown RBP11.65□□□□□ -0.55
VPS4A-201ENST00000254950 NCKAP1Q9Y2A7 1128 aa11.65□□□□□ -0.55
VPS4A-201ENST00000254950 GABBR2O75899 941 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 PRNPP04156 253 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 C2P06681 752 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 CCDC166P0CW27 439 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 ADH5P11766 374 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 LIMK2P53671 638 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 SLC1A5Q15758 541 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 LYPLAL1Q5VWZ2 237 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 TNS4Q8IZW8 715 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 NKAPQ8N5F7 415 aaKnown RBP11.64□□□□□ -0.55
VPS4A-201ENST00000254950 CDC26Q8NHZ8 85 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 OLIG1Q8TAK6 271 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 DNAJC1Q96KC8 554 aaKnown RBP11.64□□□□□ -0.55
VPS4A-201ENST00000254950 PPP1R36Q96LQ0 422 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 IL12RB2Q99665 862 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 NOD2Q9HC29 1040 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 TMEM30AQ9NV96 361 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 THAP1Q9NVV9 213 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 CXXC1Q9P0U4 656 aaPredicted RBP11.64□□□□□ -0.55
VPS4A-201ENST00000254950 GGA2Q9UJY4 613 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 CCT8L1PA6NM43 557 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 ABLIM3O94929 683 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 ALDH18A1P54886 795 aaKnown RBP11.64□□□□□ -0.55
VPS4A-201ENST00000254950 PFKPQ01813 784 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 PLEKHG6Q3KR16 790 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 CXorf40AQ8TE69 158 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 SLC39A13Q96H72 371 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 PSKH2Q96QS6 385 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 OMDQ99983 421 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 MRGBPQ9NV56 204 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 VPS51Q9UID3 782 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 SRRM3A6NNA2 597 aaPredicted RBP11.64□□□□□ -0.55
VPS4A-201ENST00000254950 PDGFRLQ15198 375 aa11.64□□□□□ -0.55
VPS4A-201ENST00000254950 FAM151BQ6UXP7 276 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms