RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 HMOX1P09601 288 aa16.11■□□□□ 0.17
LINC00540-203ENST00000631321 NUDT16Q96DE0 195 aaKnown RBP16.11■□□□□ 0.17
LINC00540-203ENST00000631321 CPS1P31327 1500 aa16.1■□□□□ 0.17
LINC00540-203ENST00000631321 MON2Q7Z3U7 1717 aa16.1■□□□□ 0.17
LINC00540-203ENST00000631321 ZBTB7BO15156 539 aaPredicted RBP16.1■□□□□ 0.17
LINC00540-203ENST00000631321 LMOD3Q0VAK6 560 aa16.1■□□□□ 0.17
LINC00540-203ENST00000631321 IL27Q8NEV9 243 aa16.1■□□□□ 0.17
LINC00540-203ENST00000631321 CCDC61Q9Y6R9 512 aa16.1■□□□□ 0.17
LINC00540-203ENST00000631321 SLKQ9H2G2 1235 aaPredicted RBP16.09■□□□□ 0.17
LINC00540-203ENST00000631321 ABCC4O15439 1325 aa16.09■□□□□ 0.17
LINC00540-203ENST00000631321 COG3Q96JB2 828 aa16.09■□□□□ 0.17
LINC00540-203ENST00000631321 TXNDC2Q86VQ3 553 aa16.08■□□□□ 0.17
LINC00540-203ENST00000631321 CHD1LQ86WJ1 897 aa16.08■□□□□ 0.17
LINC00540-203ENST00000631321 THUMPD2Q9BTF0 503 aaKnown RBP16.08■□□□□ 0.17
LINC00540-203ENST00000631321 MBIPQ9NS73 344 aa16.08■□□□□ 0.17
LINC00540-203ENST00000631321 ZRANB1Q9UGI0 708 aa16.08■□□□□ 0.17
LINC00540-203ENST00000631321 TSPYL6Q8N831 410 aa16.08■□□□□ 0.16
LINC00540-203ENST00000631321 CFAP44Q96MT7 982 aa16.08■□□□□ 0.16
LINC00540-203ENST00000631321 TSPOAP1O95153 1857 aa16.07■□□□□ 0.16
LINC00540-203ENST00000631321 HDGFP51858 240 aaKnown RBP16.07■□□□□ 0.16
LINC00540-203ENST00000631321 MFAP1P55081 439 aaKnown RBP16.07■□□□□ 0.16
LINC00540-203ENST00000631321 GCC1Q96CN9 775 aa16.07■□□□□ 0.16
LINC00540-203ENST00000631321 ZNF692Q9BU19 519 aaPredicted RBP16.07■□□□□ 0.16
LINC00540-203ENST00000631321 C3P01024 1663 aa16.07■□□□□ 0.16
LINC00540-203ENST00000631321 AKAP12Q02952 1782 aa16.06■□□□□ 0.16
LINC00540-203ENST00000631321 MLECQ14165 292 aa16.06■□□□□ 0.16
LINC00540-203ENST00000631321 NRKQ7Z2Y5 1582 aa16.05■□□□□ 0.16
LINC00540-203ENST00000631321 KIF24Q5T7B8 1368 aa16.05■□□□□ 0.16
LINC00540-203ENST00000631321 RBM25P49756 843 aaKnown RBP16.05■□□□□ 0.16
LINC00540-203ENST00000631321 BMP2KLQ5H9B9 411 aa16.05■□□□□ 0.16
LINC00540-203ENST00000631321 LNPKQ9C0E8 428 aa16.05■□□□□ 0.16
LINC00540-203ENST00000631321 PRR36Q9H6K5 1346 aa16.04■□□□□ 0.16
LINC00540-203ENST00000631321 TWISTNBQ3B726 338 aaPredicted RBP16.04■□□□□ 0.16
LINC00540-203ENST00000631321 NCKAP5LQ9HCH0 1330 aa16.04■□□□□ 0.16
LINC00540-203ENST00000631321 RRS1Q15050 365 aaKnown RBP16.04■□□□□ 0.16
LINC00540-203ENST00000631321 API5Q9BZZ5 524 aaKnown RBP16.03■□□□□ 0.16
LINC00540-203ENST00000631321 BRPF3Q9ULD4 1205 aa16.03■□□□□ 0.16
LINC00540-203ENST00000631321 TNRQ92752 1358 aa16.03■□□□□ 0.16
LINC00540-203ENST00000631321 TMEM2Q9UHN6 1383 aa16.03■□□□□ 0.16
LINC00540-203ENST00000631321 C8orf58Q8NAV2 365 aa16.03■□□□□ 0.16
LINC00540-203ENST00000631321 SIRT2Q8IXJ6 389 aa16.02■□□□□ 0.16
LINC00540-203ENST00000631321 ROBO2Q9HCK4 1378 aa16.02■□□□□ 0.15
LINC00540-203ENST00000631321 SNX21Q969T3 373 aa16.02■□□□□ 0.15
LINC00540-203ENST00000631321 ITSN1Q15811 1721 aa16.01■□□□□ 0.15
LINC00540-203ENST00000631321 CHMP5Q9NZZ3 219 aa16.01■□□□□ 0.15
LINC00540-203ENST00000631321 ADAMTS13Q76LX8 1427 aa16.01■□□□□ 0.15
LINC00540-203ENST00000631321 NCOA3Q9Y6Q9 1424 aa16.01■□□□□ 0.15
LINC00540-203ENST00000631321 ESF1Q9H501 851 aaKnown RBP16■□□□□ 0.15
LINC00540-203ENST00000631321 DLG5Q8TDM6 1919 aa16■□□□□ 0.15
LINC00540-203ENST00000631321 OVOS2A0A0J9YW53 1432 aa16■□□□□ 0.15
LINC00540-203ENST00000631321 ANKRD45Q5TZF3 282 aa16■□□□□ 0.15
LINC00540-203ENST00000631321 OVOS2Q6IE36 1432 aa16■□□□□ 0.15
LINC00540-203ENST00000631321 PLEKHG3A1L390 1219 aa15.99■□□□□ 0.15
LINC00540-203ENST00000631321 TTC21BQ7Z4L5 1316 aa15.99■□□□□ 0.15
LINC00540-203ENST00000631321 FAM83GA6ND36 823 aa15.99■□□□□ 0.15
LINC00540-203ENST00000631321 ELL2O00472 640 aaPredicted RBP15.99■□□□□ 0.15
LINC00540-203ENST00000631321 EIF4A2Q14240 407 aaKnown RBP15.99■□□□□ 0.15
LINC00540-203ENST00000631321 HSCBQ8IWL3 235 aa15.99■□□□□ 0.15
LINC00540-203ENST00000631321 C1orf115Q9H7X2 142 aa15.98■□□□□ 0.15
LINC00540-203ENST00000631321 TOPAZ1Q8N9V7 1692 aa15.98■□□□□ 0.15
LINC00540-203ENST00000631321 MCM4P33991 863 aa15.98■□□□□ 0.15
LINC00540-203ENST00000631321 DDIT3P35638 169 aa15.98■□□□□ 0.15
LINC00540-203ENST00000631321 UBR1Q8IWV7 1749 aa15.98■□□□□ 0.15
LINC00540-203ENST00000631321 HAP1P54257 671 aaPredicted RBP15.97■□□□□ 0.15
LINC00540-203ENST00000631321 USP31Q70CQ4 1352 aa15.97■□□□□ 0.15
LINC00540-203ENST00000631321 CHL1O00533 1208 aa15.97■□□□□ 0.15
LINC00540-203ENST00000631321 INTS3Q68E01 1043 aaKnown RBP15.97■□□□□ 0.15
LINC00540-203ENST00000631321 KIAA0232Q92628 1395 aa15.97■□□□□ 0.15
LINC00540-203ENST00000631321 PLEKHG1Q9ULL1 1385 aa15.97■□□□□ 0.15
LINC00540-203ENST00000631321 DCTN1Q14203 1278 aa15.96■□□□□ 0.15
LINC00540-203ENST00000631321 AEBP1Q8IUX7 1158 aa15.96■□□□□ 0.15
LINC00540-203ENST00000631321 USP6P35125 1406 aa15.96■□□□□ 0.14
LINC00540-203ENST00000631321 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.96■□□□□ 0.14
LINC00540-203ENST00000631321 RGS12O14924 1447 aa15.95■□□□□ 0.14
LINC00540-203ENST00000631321 ACEP12821 1306 aa15.95■□□□□ 0.14
LINC00540-203ENST00000631321 SULT6B1Q6IMI4 303 aa15.95■□□□□ 0.14
LINC00540-203ENST00000631321 SSH2Q76I76 1423 aa15.95■□□□□ 0.14
LINC00540-203ENST00000631321 KIF2CQ99661 725 aa15.95■□□□□ 0.14
LINC00540-203ENST00000631321 NALCNQ8IZF0 1738 aa15.94■□□□□ 0.14
LINC00540-203ENST00000631321 TBC1D9Q6ZT07 1266 aa15.94■□□□□ 0.14
LINC00540-203ENST00000631321 SPRYD3Q8NCJ5 442 aa15.94■□□□□ 0.14
LINC00540-203ENST00000631321 DCTPP1Q9H773 170 aa15.94■□□□□ 0.14
LINC00540-203ENST00000631321 RGPD1P0DJD0 1748 aa15.94■□□□□ 0.14
LINC00540-203ENST00000631321 L1TD1Q5T7N2 865 aaKnown RBP15.93■□□□□ 0.14
LINC00540-203ENST00000631321 CIZ1Q9ULV3 898 aaPredicted RBP15.93■□□□□ 0.14
LINC00540-203ENST00000631321 PEAK1Q9H792 1746 aa15.92■□□□□ 0.14
LINC00540-203ENST00000631321 EIF5BO60841 1220 aaKnown RBP15.92■□□□□ 0.14
LINC00540-203ENST00000631321 ATP10DQ9P241 1426 aa15.92■□□□□ 0.14
LINC00540-203ENST00000631321 ANKRD44Q8N8A2 993 aa15.92■□□□□ 0.14
LINC00540-203ENST00000631321 RTN4Q9NQC3 1192 aaKnown RBP15.92■□□□□ 0.14
LINC00540-203ENST00000631321 CRB1P82279 1406 aa15.91■□□□□ 0.14
LINC00540-203ENST00000631321 ARHGEF10O15013 1369 aa15.91■□□□□ 0.14
LINC00540-203ENST00000631321 PTPRCP08575 1304 aa15.91■□□□□ 0.14
LINC00540-203ENST00000631321 CDC45O75419 566 aa15.91■□□□□ 0.14
LINC00540-203ENST00000631321 LTKP29376 864 aa15.9■□□□□ 0.14
LINC00540-203ENST00000631321 PLEKHM2Q8IWE5 1019 aa15.9■□□□□ 0.14
LINC00540-203ENST00000631321 KIF13AQ9H1H9 1805 aa15.9■□□□□ 0.14
LINC00540-203ENST00000631321 PTPRUQ92729 1446 aa15.9■□□□□ 0.14
LINC00540-203ENST00000631321 RPAP2Q8IXW5 612 aaPredicted RBP15.9■□□□□ 0.14
LINC00540-203ENST00000631321 TTC21AQ8NDW8 1320 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms