RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 SKAP1Q86WV1 359 aa25.38■■□□□ 1.65
CHRNA4-209ENST00000627000 AEBP1Q8IUX7 1158 aa25.38■■□□□ 1.65
CHRNA4-209ENST00000627000 COG6Q9Y2V7 657 aa25.38■■□□□ 1.65
CHRNA4-209ENST00000627000 MAP3K19Q56UN5 1328 aa25.37■■□□□ 1.65
CHRNA4-209ENST00000627000 NUTM2GQ5VZR2 741 aa25.35■■□□□ 1.65
CHRNA4-209ENST00000627000 SULT6B1Q6IMI4 303 aa25.35■■□□□ 1.65
CHRNA4-209ENST00000627000 CT47B1P0C2W7 299 aaPredicted RBP25.34■■□□□ 1.65
CHRNA4-209ENST00000627000 RLBP1P12271 317 aa25.34■■□□□ 1.65
CHRNA4-209ENST00000627000 MARF1Q9Y4F3 1742 aaKnown RBP25.34■■□□□ 1.65
CHRNA4-209ENST00000627000 NLRP6P59044 892 aa25.34■■□□□ 1.65
CHRNA4-209ENST00000627000 LAS1LQ9Y4W2 734 aaKnown RBP25.34■■□□□ 1.65
CHRNA4-209ENST00000627000 ADGRL3Q9HAR2 1447 aa25.33■■□□□ 1.65
CHRNA4-209ENST00000627000 PHF8Q9UPP1 1060 aa25.32■■□□□ 1.64
CHRNA4-209ENST00000627000 RGPD1P0DJD0 1748 aa25.32■■□□□ 1.64
CHRNA4-209ENST00000627000 CENPQQ7L2Z9 268 aaPredicted RBP25.32■■□□□ 1.64
CHRNA4-209ENST00000627000 PAK3O75914 559 aaPredicted RBP25.31■■□□□ 1.64
CHRNA4-209ENST00000627000 SSH1Q8WYL5 1049 aa25.31■■□□□ 1.64
CHRNA4-209ENST00000627000 CLUAP1Q96AJ1 413 aa25.31■■□□□ 1.64
CHRNA4-209ENST00000627000 SMC4Q9NTJ3 1288 aa25.3■■□□□ 1.64
CHRNA4-209ENST00000627000 FAM83GA6ND36 823 aa25.29■■□□□ 1.64
CHRNA4-209ENST00000627000 TCERG1O14776 1098 aaKnown RBP25.29■■□□□ 1.64
CHRNA4-209ENST00000627000 SBNO1A3KN83 1393 aa25.29■■□□□ 1.64
CHRNA4-209ENST00000627000 ABTB2Q8N961 1025 aa25.28■■□□□ 1.64
CHRNA4-209ENST00000627000 FLT4P35916 1363 aa25.28■■□□□ 1.64
CHRNA4-209ENST00000627000 AMPHP49418 695 aa25.27■■□□□ 1.64
CHRNA4-209ENST00000627000 DCTN1Q14203 1278 aa25.27■■□□□ 1.64
CHRNA4-209ENST00000627000 C14orf37Q86TY3 774 aa25.27■■□□□ 1.64
CHRNA4-209ENST00000627000 ESCO1Q5FWF5 840 aa25.26■■□□□ 1.63
CHRNA4-209ENST00000627000 ZKSCAN2Q63HK3 967 aa25.26■■□□□ 1.63
CHRNA4-209ENST00000627000 USP54Q70EL1 1684 aa25.26■■□□□ 1.63
CHRNA4-209ENST00000627000 CALD1Q05682 793 aaKnown RBP25.25■■□□□ 1.63
CHRNA4-209ENST00000627000 IFT57Q9NWB7 429 aa25.25■■□□□ 1.63
CHRNA4-209ENST00000627000 NWD1Q149M9 1564 aa25.25■■□□□ 1.63
CHRNA4-209ENST00000627000 ZNF853P0CG23 659 aa25.24■■□□□ 1.63
CHRNA4-209ENST00000627000 LMOD3Q0VAK6 560 aa25.24■■□□□ 1.63
CHRNA4-209ENST00000627000 ANP32EQ9BTT0 268 aa25.24■■□□□ 1.63
CHRNA4-209ENST00000627000 IGHDP01880 384 aa25.24■■□□□ 1.63
CHRNA4-209ENST00000627000 GNAI1P63096 354 aa25.24■■□□□ 1.63
CHRNA4-209ENST00000627000 MBIPQ9NS73 344 aa25.23■■□□□ 1.63
CHRNA4-209ENST00000627000 ARHGEF10O15013 1369 aa25.22■■□□□ 1.63
CHRNA4-209ENST00000627000 TRIM27P14373 513 aa25.21■■□□□ 1.63
CHRNA4-209ENST00000627000 DZIP1LQ8IYY4 767 aaKnown RBP25.21■■□□□ 1.63
CHRNA4-209ENST00000627000 NOB1Q9ULX3 412 aaKnown RBP25.21■■□□□ 1.63
CHRNA4-209ENST00000627000 TSPYL6Q8N831 410 aa25.21■■□□□ 1.63
CHRNA4-209ENST00000627000 ORAI2Q96SN7 254 aa25.2■■□□□ 1.62
CHRNA4-209ENST00000627000 EYA1Q99502 592 aa25.2■■□□□ 1.62
CHRNA4-209ENST00000627000 MS4A1P11836 297 aa25.2■■□□□ 1.62
CHRNA4-209ENST00000627000 PROSER2Q86WR7 435 aaPredicted RBP25.2■■□□□ 1.62
CHRNA4-209ENST00000627000 FTSJ3Q8IY81 847 aaKnown RBP25.2■■□□□ 1.62
CHRNA4-209ENST00000627000 CFAP44Q96MT7 982 aa25.2■■□□□ 1.62
CHRNA4-209ENST00000627000 HOXC9P31274 260 aa25.19■■□□□ 1.62
CHRNA4-209ENST00000627000 PSME1Q06323 249 aa25.19■■□□□ 1.62
CHRNA4-209ENST00000627000 MVPQ14764 893 aaKnown RBP25.19■■□□□ 1.62
CHRNA4-209ENST00000627000 ELL2O00472 640 aaPredicted RBP25.18■■□□□ 1.62
CHRNA4-209ENST00000627000 VAMP4O75379 141 aa25.18■■□□□ 1.62
CHRNA4-209ENST00000627000 ATF7IPQ6VMQ6 1270 aa25.18■■□□□ 1.62
CHRNA4-209ENST00000627000 PDE4AP27815 886 aa25.17■■□□□ 1.62
CHRNA4-209ENST00000627000 ALDH1L2Q3SY69 923 aa25.17■■□□□ 1.62
CHRNA4-209ENST00000627000 PCDHB15Q9Y5E8 787 aa25.17■■□□□ 1.62
CHRNA4-209ENST00000627000 IGSF1Q8N6C5 1336 aa25.17■■□□□ 1.62
CHRNA4-209ENST00000627000 MCM10Q7L590 875 aa25.16■■□□□ 1.62
CHRNA4-209ENST00000627000 KDRP35968 1356 aa25.16■■□□□ 1.62
CHRNA4-209ENST00000627000 MSH5O43196 834 aa25.15■■□□□ 1.62
CHRNA4-209ENST00000627000 FOXO3O43524 673 aa25.15■■□□□ 1.62
CHRNA4-209ENST00000627000 XPCQ01831 940 aaPredicted RBP25.15■■□□□ 1.62
CHRNA4-209ENST00000627000 LTN1O94822 1766 aa25.15■■□□□ 1.62
CHRNA4-209ENST00000627000 C8orf58Q8NAV2 365 aa25.14■■□□□ 1.62
CHRNA4-209ENST00000627000 KIF16BQ96L93 1317 aa25.14■■□□□ 1.62
CHRNA4-209ENST00000627000 MTHFSDQ2M296 383 aaKnown RBP25.14■■□□□ 1.61
CHRNA4-209ENST00000627000 KIF24Q5T7B8 1368 aa25.13■■□□□ 1.61
CHRNA4-209ENST00000627000 LTV1Q96GA3 475 aaPredicted RBP25.13■■□□□ 1.61
CHRNA4-209ENST00000627000 BACH2Q9BYV9 841 aa25.13■■□□□ 1.61
CHRNA4-209ENST00000627000 AAMPQ13685 434 aa25.12■■□□□ 1.61
CHRNA4-209ENST00000627000 ZNF428Q96B54 188 aa25.12■■□□□ 1.61
CHRNA4-209ENST00000627000 TWISTNBQ3B726 338 aaPredicted RBP25.12■■□□□ 1.61
CHRNA4-209ENST00000627000 NFAT5O94916 1531 aa25.11■■□□□ 1.61
CHRNA4-209ENST00000627000 RGS3P49796 1198 aa25.11■■□□□ 1.61
CHRNA4-209ENST00000627000 ITPRIPQ8IWB1 547 aa25.11■■□□□ 1.61
CHRNA4-209ENST00000627000 TMEM57Q8N5G2 664 aa25.11■■□□□ 1.61
CHRNA4-209ENST00000627000 MRPL50Q8N5N7 158 aaKnown RBP25.1■■□□□ 1.61
CHRNA4-209ENST00000627000 STRCP1A6NGW2 1772 aa25.1■■□□□ 1.61
CHRNA4-209ENST00000627000 IPO8O15397 1037 aaKnown RBP25.1■■□□□ 1.61
CHRNA4-209ENST00000627000 BRPF1P55201 1214 aaPredicted RBP25.1■■□□□ 1.61
CHRNA4-209ENST00000627000 HSPA2P54652 639 aa25.09■■□□□ 1.61
CHRNA4-209ENST00000627000 C19orf44Q9H6X5 657 aa25.08■■□□□ 1.61
CHRNA4-209ENST00000627000 CHL1O00533 1208 aa25.07■■□□□ 1.6
CHRNA4-209ENST00000627000 PLEKHG5O94827 1062 aa25.07■■□□□ 1.6
CHRNA4-209ENST00000627000 KRT24Q2M2I5 525 aa25.07■■□□□ 1.6
CHRNA4-209ENST00000627000 CRB1P82279 1406 aa25.07■■□□□ 1.6
CHRNA4-209ENST00000627000 RTL1A6NKG5 1358 aa25.07■■□□□ 1.6
CHRNA4-209ENST00000627000 C1orf167Q5SNV9 1468 aa25.07■■□□□ 1.6
CHRNA4-209ENST00000627000 DDX19BQ9UMR2 479 aa25.07■■□□□ 1.6
CHRNA4-209ENST00000627000 ZBTB7CA1YPR0 619 aa25.06■■□□□ 1.6
CHRNA4-209ENST00000627000 USHBP1Q8N6Y0 703 aa25.05■■□□□ 1.6
CHRNA4-209ENST00000627000 IP6K1Q92551 441 aa25.05■■□□□ 1.6
CHRNA4-209ENST00000627000 TMEM94Q12767 1356 aa25.04■■□□□ 1.6
CHRNA4-209ENST00000627000 TRPM3Q9HCF6 1732 aaPredicted RBP25.04■■□□□ 1.6
CHRNA4-209ENST00000627000 LMOD2Q6P5Q4 547 aa25.03■■□□□ 1.6
CHRNA4-209ENST00000627000 GAS2L2Q8NHY3 880 aa25.03■■□□□ 1.6
CHRNA4-209ENST00000627000 RTF1Q92541 710 aaKnown RBP25.03■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms