RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 MVPQ14764 893 aaKnown RBP13.61□□□□□ -0.23
CUX1-221ENST00000622516 NGDNQ8NEJ9 315 aaKnown RBP13.61□□□□□ -0.23
CUX1-221ENST00000622516 C3P01024 1663 aa13.6□□□□□ -0.23
CUX1-221ENST00000622516 KCNA6P17658 529 aa13.6□□□□□ -0.23
CUX1-221ENST00000622516 EIF4A2Q14240 407 aaKnown RBP13.6□□□□□ -0.23
CUX1-221ENST00000622516 SLC4A3P48751 1232 aa13.59□□□□□ -0.23
CUX1-221ENST00000622516 FAM161AQ3B820 660 aa13.59□□□□□ -0.23
CUX1-221ENST00000622516 ATF7IPQ6VMQ6 1270 aa13.59□□□□□ -0.23
CUX1-221ENST00000622516 TMEM57Q8N5G2 664 aa13.59□□□□□ -0.23
CUX1-221ENST00000622516 TBX22Q9Y458 520 aa13.59□□□□□ -0.23
CUX1-221ENST00000622516 KNDC1Q76NI1 1749 aa13.58□□□□□ -0.24
CUX1-221ENST00000622516 PLEKHG3A1L390 1219 aa13.58□□□□□ -0.24
CUX1-221ENST00000622516 MBIPQ9NS73 344 aa13.58□□□□□ -0.24
CUX1-221ENST00000622516 IL16Q14005 1332 aa13.58□□□□□ -0.24
CUX1-221ENST00000622516 PLEKHG5O94827 1062 aa13.58□□□□□ -0.24
CUX1-221ENST00000622516 AATKQ6ZMQ8 1374 aa13.58□□□□□ -0.24
CUX1-221ENST00000622516 MON2Q7Z3U7 1717 aa13.56□□□□□ -0.24
CUX1-221ENST00000622516 FER1L4A9Z1Z3 1794 aa13.56□□□□□ -0.24
CUX1-221ENST00000622516 CT47B1P0C2W7 299 aaPredicted RBP13.56□□□□□ -0.24
CUX1-221ENST00000622516 MCM10Q7L590 875 aa13.56□□□□□ -0.24
CUX1-221ENST00000622516 PDZRN3Q9UPQ7 1066 aa13.56□□□□□ -0.24
CUX1-221ENST00000622516 USP6P35125 1406 aa13.56□□□□□ -0.24
CUX1-221ENST00000622516 CDK12Q9NYV4 1490 aaPredicted RBP13.56□□□□□ -0.24
CUX1-221ENST00000622516 ITSN1Q15811 1721 aa13.56□□□□□ -0.24
CUX1-221ENST00000622516 KRT24Q2M2I5 525 aa13.56□□□□□ -0.24
CUX1-221ENST00000622516 C8orf58Q8NAV2 365 aa13.56□□□□□ -0.24
CUX1-221ENST00000622516 VAMP4O75379 141 aa13.55□□□□□ -0.24
CUX1-221ENST00000622516 SEC24BO95487 1268 aa13.55□□□□□ -0.24
CUX1-221ENST00000622516 C14orf37Q86TY3 774 aa13.55□□□□□ -0.24
CUX1-221ENST00000622516 UBE2Q2Q8WVN8 375 aa13.55□□□□□ -0.24
CUX1-221ENST00000622516 AKAP12Q02952 1782 aa13.55□□□□□ -0.24
CUX1-221ENST00000622516 RGPD8O14715 1765 aaPredicted RBP13.54□□□□□ -0.24
CUX1-221ENST00000622516 MAP3K19Q56UN5 1328 aa13.54□□□□□ -0.24
CUX1-221ENST00000622516 FOXO3O43524 673 aa13.54□□□□□ -0.24
CUX1-221ENST00000622516 RWDD1Q9H446 243 aaPredicted RBP13.54□□□□□ -0.24
CUX1-221ENST00000622516 MIS18AQ9NYP9 233 aa13.54□□□□□ -0.24
CUX1-221ENST00000622516 NLRP6P59044 892 aa13.53□□□□□ -0.24
CUX1-221ENST00000622516 GNAI1P63096 354 aa13.53□□□□□ -0.24
CUX1-221ENST00000622516 C1orf115Q9H7X2 142 aa13.53□□□□□ -0.24
CUX1-221ENST00000622516 TWISTNBQ3B726 338 aaPredicted RBP13.53□□□□□ -0.24
CUX1-221ENST00000622516 ARHGAP23Q9P227 1491 aa13.53□□□□□ -0.24
CUX1-221ENST00000622516 SLIT1O75093 1534 aa13.52□□□□□ -0.24
CUX1-221ENST00000622516 DDX19BQ9UMR2 479 aa13.52□□□□□ -0.24
CUX1-221ENST00000622516 LTV1Q96GA3 475 aaPredicted RBP13.52□□□□□ -0.25
CUX1-221ENST00000622516 CFAP44Q96MT7 982 aa13.52□□□□□ -0.25
CUX1-221ENST00000622516 IFT57Q9NWB7 429 aa13.52□□□□□ -0.25
CUX1-221ENST00000622516 OVOS2A0A0J9YW53 1432 aa13.52□□□□□ -0.25
CUX1-221ENST00000622516 OVOS2Q6IE36 1432 aa13.52□□□□□ -0.25
CUX1-221ENST00000622516 IPO8O15397 1037 aaKnown RBP13.51□□□□□ -0.25
CUX1-221ENST00000622516 AMPHP49418 695 aa13.51□□□□□ -0.25
CUX1-221ENST00000622516 ANO8Q9HCE9 1232 aaPredicted RBP13.51□□□□□ -0.25
CUX1-221ENST00000622516 ZNF853P0CG23 659 aa13.51□□□□□ -0.25
CUX1-221ENST00000622516 KIF16BQ96L93 1317 aa13.51□□□□□ -0.25
CUX1-221ENST00000622516 DLG5Q8TDM6 1919 aa13.51□□□□□ -0.25
CUX1-221ENST00000622516 MRPL50Q8N5N7 158 aaKnown RBP13.5□□□□□ -0.25
CUX1-221ENST00000622516 ALDH1L2Q3SY69 923 aa13.5□□□□□ -0.25
CUX1-221ENST00000622516 ABTB2Q8N961 1025 aa13.5□□□□□ -0.25
CUX1-221ENST00000622516 CALD1Q05682 793 aaKnown RBP13.5□□□□□ -0.25
CUX1-221ENST00000622516 ZBTB40Q9NUA8 1239 aa13.5□□□□□ -0.25
CUX1-221ENST00000622516 ZBTB7CA1YPR0 619 aa13.49□□□□□ -0.25
CUX1-221ENST00000622516 LMOD3Q0VAK6 560 aa13.48□□□□□ -0.25
CUX1-221ENST00000622516 SSH2Q76I76 1423 aa13.48□□□□□ -0.25
CUX1-221ENST00000622516 DIP2AQ14689 1571 aa13.48□□□□□ -0.25
CUX1-221ENST00000622516 PEAK1Q9H792 1746 aa13.48□□□□□ -0.25
CUX1-221ENST00000622516 ANKLE2Q86XL3 938 aa13.48□□□□□ -0.25
CUX1-221ENST00000622516 EYA1Q99502 592 aa13.48□□□□□ -0.25
CUX1-221ENST00000622516 TOPAZ1Q8N9V7 1692 aa13.48□□□□□ -0.25
CUX1-221ENST00000622516 AAMPQ13685 434 aa13.47□□□□□ -0.25
CUX1-221ENST00000622516 MTHFSDQ2M296 383 aaKnown RBP13.47□□□□□ -0.25
CUX1-221ENST00000622516 PTCH1Q13635 1447 aa13.47□□□□□ -0.25
CUX1-221ENST00000622516 XPCQ01831 940 aaPredicted RBP13.47□□□□□ -0.25
CUX1-221ENST00000622516 NRKQ7Z2Y5 1582 aa13.47□□□□□ -0.25
CUX1-221ENST00000622516 USP31Q70CQ4 1352 aa13.46□□□□□ -0.25
CUX1-221ENST00000622516 TTC21AQ8NDW8 1320 aa13.46□□□□□ -0.25
CUX1-221ENST00000622516 USHBP1Q8N6Y0 703 aa13.46□□□□□ -0.26
CUX1-221ENST00000622516 ESCO1Q5FWF5 840 aa13.45□□□□□ -0.26
CUX1-221ENST00000622516 SETD1BQ9UPS6 1966 aaKnown RBP13.45□□□□□ -0.26
CUX1-221ENST00000622516 RIMS1Q86UR5 1692 aaKnown RBP13.45□□□□□ -0.26
CUX1-221ENST00000622516 ZBTB7BO15156 539 aaPredicted RBP13.45□□□□□ -0.26
CUX1-221ENST00000622516 LNPKQ9C0E8 428 aa13.45□□□□□ -0.26
CUX1-221ENST00000622516 USP19O94966 1318 aa13.45□□□□□ -0.26
CUX1-221ENST00000622516 DDRGK1Q96HY6 314 aa13.44□□□□□ -0.26
CUX1-221ENST00000622516 CEP170BQ9Y4F5 1589 aaPredicted RBP13.44□□□□□ -0.26
CUX1-221ENST00000622516 HDAC1Q13547 482 aaPredicted RBP13.44□□□□□ -0.26
CUX1-221ENST00000622516 FLT4P35916 1363 aa13.43□□□□□ -0.26
CUX1-221ENST00000622516 PHF8Q9UPP1 1060 aa13.43□□□□□ -0.26
CUX1-221ENST00000622516 CHL1O00533 1208 aa13.43□□□□□ -0.26
CUX1-221ENST00000622516 RTF1Q92541 710 aaKnown RBP13.43□□□□□ -0.26
CUX1-221ENST00000622516 ZNF428Q96B54 188 aa13.43□□□□□ -0.26
CUX1-221ENST00000622516 SBNO1A3KN83 1393 aa13.42□□□□□ -0.26
CUX1-221ENST00000622516 HOXC9P31274 260 aa13.42□□□□□ -0.26
CUX1-221ENST00000622516 LMOD2Q6P5Q4 547 aa13.42□□□□□ -0.26
CUX1-221ENST00000622516 PSME1Q06323 249 aa13.42□□□□□ -0.26
CUX1-221ENST00000622516 NECTIN2Q92692 538 aa13.42□□□□□ -0.26
CUX1-221ENST00000622516 SMC5Q8IY18 1101 aa13.41□□□□□ -0.26
CUX1-221ENST00000622516 ORAI2Q96SN7 254 aa13.41□□□□□ -0.26
CUX1-221ENST00000622516 BRPF1P55201 1214 aaPredicted RBP13.41□□□□□ -0.26
CUX1-221ENST00000622516 TSPYL4Q9UJ04 414 aa13.41□□□□□ -0.26
CUX1-221ENST00000622516 ANKRD45Q5TZF3 282 aa13.41□□□□□ -0.26
CUX1-221ENST00000622516 SIRT2Q8IXJ6 389 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms