RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 ABTB2Q8N961 1025 aa13.89□□□□□ -0.19
SS18-217ENST00000580958 CDCA7LQ96GN5 454 aa13.89□□□□□ -0.19
SS18-217ENST00000580958 ZNF521Q96K83 1311 aa13.89□□□□□ -0.19
SS18-217ENST00000580958 ALS2Q96Q42 1657 aa13.88□□□□□ -0.19
SS18-217ENST00000580958 DLG5Q8TDM6 1919 aa13.88□□□□□ -0.19
SS18-217ENST00000580958 IL13P35225 146 aa13.88□□□□□ -0.19
SS18-217ENST00000580958 RGPD1P0DJD0 1748 aa13.87□□□□□ -0.19
SS18-217ENST00000580958 NEFLP07196 543 aa13.87□□□□□ -0.19
SS18-217ENST00000580958 TCP11L2Q8N4U5 519 aa13.87□□□□□ -0.19
SS18-217ENST00000580958 NGEFQ8N5V2 710 aa13.87□□□□□ -0.19
SS18-217ENST00000580958 FOXO3O43524 673 aa13.86□□□□□ -0.19
SS18-217ENST00000580958 XPCQ01831 940 aaPredicted RBP13.86□□□□□ -0.19
SS18-217ENST00000580958 CADPS2Q86UW7 1296 aa13.86□□□□□ -0.19
SS18-217ENST00000580958 RRP7AQ9Y3A4 280 aaKnown RBP13.86□□□□□ -0.19
SS18-217ENST00000580958 NFAT5O94916 1531 aa13.85□□□□□ -0.19
SS18-217ENST00000580958 FKBP8Q14318 412 aa13.85□□□□□ -0.19
SS18-217ENST00000580958 KRT28Q7Z3Y7 464 aa13.85□□□□□ -0.19
SS18-217ENST00000580958 REM2Q8IYK8 340 aaPredicted RBP13.85□□□□□ -0.19
SS18-217ENST00000580958 PLEKHF1Q96S99 279 aa13.85□□□□□ -0.19
SS18-217ENST00000580958 MAP3K19Q56UN5 1328 aa13.85□□□□□ -0.19
SS18-217ENST00000580958 SBNO1A3KN83 1393 aa13.84□□□□□ -0.19
SS18-217ENST00000580958 GOLGA2Q08379 1002 aa13.84□□□□□ -0.19
SS18-217ENST00000580958 NEUROD2Q15784 382 aa13.84□□□□□ -0.19
SS18-217ENST00000580958 RSPH6AQ9H0K4 717 aa13.84□□□□□ -0.19
SS18-217ENST00000580958 MAPK8IP3Q9UPT6 1336 aa13.84□□□□□ -0.19
SS18-217ENST00000580958 SLIT3O75094 1523 aa13.84□□□□□ -0.19
SS18-217ENST00000580958 FLT4P35916 1363 aa13.83□□□□□ -0.19
SS18-217ENST00000580958 EIF4A2Q14240 407 aaKnown RBP13.83□□□□□ -0.2
SS18-217ENST00000580958 HSP90AB2PQ58FF8 381 aa13.83□□□□□ -0.2
SS18-217ENST00000580958 PNNQ9H307 717 aaKnown RBP13.83□□□□□ -0.2
SS18-217ENST00000580958 PHRF1Q9P1Y6 1649 aaKnown RBP13.82□□□□□ -0.2
SS18-217ENST00000580958 RGPD2P0DJD1 1756 aa13.82□□□□□ -0.2
SS18-217ENST00000580958 RGPD5Q99666 1765 aa13.82□□□□□ -0.2
SS18-217ENST00000580958 FCHSD2O94868 740 aa13.82□□□□□ -0.2
SS18-217ENST00000580958 HMOX1P09601 288 aa13.82□□□□□ -0.2
SS18-217ENST00000580958 AMPHP49418 695 aa13.82□□□□□ -0.2
SS18-217ENST00000580958 WWC1Q8IX03 1113 aa13.82□□□□□ -0.2
SS18-217ENST00000580958 PRKAR2BP31323 418 aa13.81□□□□□ -0.2
SS18-217ENST00000580958 TMPOP42166 694 aaKnown RBP13.81□□□□□ -0.2
SS18-217ENST00000580958 SLFN5Q08AF3 891 aa13.81□□□□□ -0.2
SS18-217ENST00000580958 DDX17Q92841 729 aaKnown RBP13.81□□□□□ -0.2
SS18-217ENST00000580958 CRYBG1Q9Y4K1 1723 aa13.81□□□□□ -0.2
SS18-217ENST00000580958 IRX6P78412 446 aaPredicted RBP13.8□□□□□ -0.2
SS18-217ENST00000580958 CCDC27Q2M243 656 aa13.8□□□□□ -0.2
SS18-217ENST00000580958 DUSP27Q5VZP5 1158 aa13.8□□□□□ -0.2
SS18-217ENST00000580958 LMOD2Q6P5Q4 547 aa13.8□□□□□ -0.2
SS18-217ENST00000580958 KIF24Q5T7B8 1368 aa13.8□□□□□ -0.2
SS18-217ENST00000580958 PXDNQ92626 1479 aa13.8□□□□□ -0.2
SS18-217ENST00000580958 MED1Q15648 1581 aaPredicted RBP13.79□□□□□ -0.2
SS18-217ENST00000580958 TRMT2AQ8IZ69 625 aaKnown RBP13.79□□□□□ -0.2
SS18-217ENST00000580958 RTL1A6NKG5 1358 aa13.79□□□□□ -0.2
SS18-217ENST00000580958 NHSL1Q5SYE7 1610 aa13.79□□□□□ -0.2
SS18-217ENST00000580958 E9PSI1 815 aa13.78□□□□□ -0.2
SS18-217ENST00000580958 PLEKHG5O94827 1062 aa13.78□□□□□ -0.2
SS18-217ENST00000580958 NEFMP07197 916 aa13.78□□□□□ -0.2
SS18-217ENST00000580958 HOXC9P31274 260 aa13.78□□□□□ -0.2
SS18-217ENST00000580958 KCNH5Q8NCM2 988 aa13.78□□□□□ -0.2
SS18-217ENST00000580958 RCAN3Q9UKA8 241 aa13.78□□□□□ -0.2
SS18-217ENST00000580958 USP19O94966 1318 aa13.78□□□□□ -0.2
SS18-217ENST00000580958 RNF123Q5XPI4 1314 aa13.78□□□□□ -0.2
SS18-217ENST00000580958 NPHP3Q7Z494 1330 aa13.78□□□□□ -0.2
SS18-217ENST00000580958 ARHGEF10O15013 1369 aa13.78□□□□□ -0.2
SS18-217ENST00000580958 ZBTB7CA1YPR0 619 aa13.77□□□□□ -0.21
SS18-217ENST00000580958 SPDYE2BA6NHP3 402 aa13.77□□□□□ -0.21
SS18-217ENST00000580958 SPDYE6P0CI01 402 aa13.77□□□□□ -0.21
SS18-217ENST00000580958 SPDYE2Q495Y8 402 aa13.77□□□□□ -0.21
SS18-217ENST00000580958 TNS3Q68CZ2 1445 aa13.77□□□□□ -0.21
SS18-217ENST00000580958 SULT6B1Q6IMI4 303 aa13.77□□□□□ -0.21
SS18-217ENST00000580958 BRINP3Q76B58 766 aa13.77□□□□□ -0.21
SS18-217ENST00000580958 AEBP1Q8IUX7 1158 aa13.77□□□□□ -0.21
SS18-217ENST00000580958 WDR63Q8IWG1 891 aa13.77□□□□□ -0.21
SS18-217ENST00000580958 LTBP4Q8N2S1 1624 aa13.76□□□□□ -0.21
SS18-217ENST00000580958 RIPK4P57078 832 aa13.76□□□□□ -0.21
SS18-217ENST00000580958 NFE2L2Q16236 605 aa13.76□□□□□ -0.21
SS18-217ENST00000580958 PHACTR3Q96KR7 559 aa13.76□□□□□ -0.21
SS18-217ENST00000580958 SLAIN2Q9P270 581 aa13.76□□□□□ -0.21
SS18-217ENST00000580958 TRIM35Q9UPQ4 493 aa13.76□□□□□ -0.21
SS18-217ENST00000580958 COL18A1P39060 1754 aa13.74□□□□□ -0.21
SS18-217ENST00000580958 ABCA3Q99758 1704 aa13.74□□□□□ -0.21
SS18-217ENST00000580958 GCP02774 474 aa13.74□□□□□ -0.21
SS18-217ENST00000580958 IP6K1Q92551 441 aa13.74□□□□□ -0.21
SS18-217ENST00000580958 LTV1Q96GA3 475 aaPredicted RBP13.74□□□□□ -0.21
SS18-217ENST00000580958 SPATA31A3Q5VYP0 1347 aa13.73□□□□□ -0.21
SS18-217ENST00000580958 IGSF1Q8N6C5 1336 aa13.73□□□□□ -0.21
SS18-217ENST00000580958 RRP1P56182 461 aaKnown RBP13.73□□□□□ -0.21
SS18-217ENST00000580958 ARHGEF25Q86VW2 580 aa13.73□□□□□ -0.21
SS18-217ENST00000580958 EYA1Q99502 592 aa13.73□□□□□ -0.21
SS18-217ENST00000580958 ROBO1Q9Y6N7 1651 aa13.72□□□□□ -0.21
SS18-217ENST00000580958 KDRP35968 1356 aa13.71□□□□□ -0.21
SS18-217ENST00000580958 VIRMAQ69YN4 1812 aaKnown RBP13.71□□□□□ -0.21
SS18-217ENST00000580958 CAMTA1Q9Y6Y1 1673 aa13.71□□□□□ -0.21
SS18-217ENST00000580958 SOS2Q07890 1332 aaPredicted RBP13.7□□□□□ -0.22
SS18-217ENST00000580958 IL16Q14005 1332 aa13.7□□□□□ -0.22
SS18-217ENST00000580958 PITPNM1O00562 1244 aa13.7□□□□□ -0.22
SS18-217ENST00000580958 MYH16Q9H6N6 1097 aa13.7□□□□□ -0.22
SS18-217ENST00000580958 ZC3H6P61129 1189 aaKnown RBP13.69□□□□□ -0.22
SS18-217ENST00000580958 ERICH6BQ5W0A0 696 aa13.69□□□□□ -0.22
SS18-217ENST00000580958 FAM208AQ9UK61 1670 aaKnown RBP13.69□□□□□ -0.22
SS18-217ENST00000580958 LMOD3Q0VAK6 560 aa13.68□□□□□ -0.22
SS18-217ENST00000580958 MKRN4PQ13434 485 aaPredicted RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms