RNA–Protein interactions for RNA: ENST00000575338.1

SMG6-217, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-217ENST00000575338 ZKSCAN2Q63HK3 967 aa8.73□□□□□ -1.01
SMG6-217ENST00000575338 PMFBP1Q8TBY8 1022 aa8.73□□□□□ -1.01
SMG6-217ENST00000575338 EMILIN1Q9Y6C2 1016 aa8.73□□□□□ -1.01
SMG6-217ENST00000575338 CACNA1FO60840 1977 aa8.73□□□□□ -1.01
SMG6-217ENST00000575338 RTL1A6NKG5 1358 aa8.73□□□□□ -1.01
SMG6-217ENST00000575338 PHRF1Q9P1Y6 1649 aaKnown RBP8.72□□□□□ -1.01
SMG6-217ENST00000575338 ILDR1Q86SU0 546 aaPredicted RBP8.72□□□□□ -1.01
SMG6-217ENST00000575338 FTSJ3Q8IY81 847 aaKnown RBP8.72□□□□□ -1.01
SMG6-217ENST00000575338 IFT57Q9NWB7 429 aa8.72□□□□□ -1.01
SMG6-217ENST00000575338 TRIM35Q9UPQ4 493 aa8.72□□□□□ -1.01
SMG6-217ENST00000575338 PEAK1Q9H792 1746 aa8.71□□□□□ -1.01
SMG6-217ENST00000575338 MARF1Q9Y4F3 1742 aaKnown RBP8.71□□□□□ -1.01
SMG6-217ENST00000575338 BCAR3O75815 825 aa8.71□□□□□ -1.02
SMG6-217ENST00000575338 CLUAP1Q96AJ1 413 aa8.71□□□□□ -1.02
SMG6-217ENST00000575338 NCOA3Q9Y6Q9 1424 aa8.71□□□□□ -1.02
SMG6-217ENST00000575338 ANP32AP39687 249 aaKnown RBP8.7□□□□□ -1.02
SMG6-217ENST00000575338 AMPHP49418 695 aa8.7□□□□□ -1.02
SMG6-217ENST00000575338 BRPF1P55201 1214 aaPredicted RBP8.7□□□□□ -1.02
SMG6-217ENST00000575338 RRS1Q15050 365 aaKnown RBP8.7□□□□□ -1.02
SMG6-217ENST00000575338 KCNH5Q8NCM2 988 aa8.7□□□□□ -1.02
SMG6-217ENST00000575338 FRAT1Q92837 279 aaPredicted RBP8.7□□□□□ -1.02
SMG6-217ENST00000575338 SMC4Q9NTJ3 1288 aa8.7□□□□□ -1.02
SMG6-217ENST00000575338 DDX19BQ9UMR2 479 aa8.7□□□□□ -1.02
SMG6-217ENST00000575338 PHF8Q9UPP1 1060 aa8.7□□□□□ -1.02
SMG6-217ENST00000575338 DMRT2Q9Y5R5 561 aa8.7□□□□□ -1.02
SMG6-217ENST00000575338 KDM2BQ8NHM5 1336 aa8.7□□□□□ -1.02
SMG6-217ENST00000575338 NCKAP5LQ9HCH0 1330 aa8.7□□□□□ -1.02
SMG6-217ENST00000575338 NUTM2FA1L443 756 aa8.69□□□□□ -1.02
SMG6-217ENST00000575338 HMOX1P09601 288 aa8.69□□□□□ -1.02
SMG6-217ENST00000575338 NLRP6P59044 892 aa8.69□□□□□ -1.02
SMG6-217ENST00000575338 MYT1Q01538 1121 aa8.69□□□□□ -1.02
SMG6-217ENST00000575338 EXOSC9Q06265 439 aaKnown RBP8.69□□□□□ -1.02
SMG6-217ENST00000575338 EIF4A2Q14240 407 aaKnown RBP8.69□□□□□ -1.02
SMG6-217ENST00000575338 C20orf194Q5TEA3 1177 aa8.69□□□□□ -1.02
SMG6-217ENST00000575338 C14orf37Q86TY3 774 aa8.69□□□□□ -1.02
SMG6-217ENST00000575338 DZIP1LQ8IYY4 767 aaKnown RBP8.69□□□□□ -1.02
SMG6-217ENST00000575338 GAS2L2Q8NHY3 880 aa8.69□□□□□ -1.02
SMG6-217ENST00000575338 CFAP44Q96MT7 982 aa8.69□□□□□ -1.02
SMG6-217ENST00000575338 DCCP43146 1447 aa8.69□□□□□ -1.02
SMG6-217ENST00000575338 HTATSF1O43719 755 aaKnown RBP8.68□□□□□ -1.02
SMG6-217ENST00000575338 MVPQ14764 893 aaKnown RBP8.68□□□□□ -1.02
SMG6-217ENST00000575338 ABTB2Q8N961 1025 aa8.68□□□□□ -1.02
SMG6-217ENST00000575338 RTF1Q92541 710 aaKnown RBP8.68□□□□□ -1.02
SMG6-217ENST00000575338 ARHGAP45Q92619 1136 aa8.68□□□□□ -1.02
SMG6-217ENST00000575338 CHMP4AQ9BY43 222 aa8.68□□□□□ -1.02
SMG6-217ENST00000575338 RWDD1Q9H446 243 aaPredicted RBP8.68□□□□□ -1.02
SMG6-217ENST00000575338 ZRANB1Q9UGI0 708 aa8.68□□□□□ -1.02
SMG6-217ENST00000575338 KDRP35968 1356 aa8.68□□□□□ -1.02
SMG6-217ENST00000575338 PSME1Q06323 249 aa8.67□□□□□ -1.02
SMG6-217ENST00000575338 SOS1Q07889 1333 aaPredicted RBP8.67□□□□□ -1.02
SMG6-217ENST00000575338 MAP3K19Q56UN5 1328 aa8.67□□□□□ -1.02
SMG6-217ENST00000575338 SULT6B1Q6IMI4 303 aa8.67□□□□□ -1.02
SMG6-217ENST00000575338 ATF7IPQ6VMQ6 1270 aa8.67□□□□□ -1.02
SMG6-217ENST00000575338 ERICH6Q7L0X2 663 aa8.67□□□□□ -1.02
SMG6-217ENST00000575338 KIAA0232Q92628 1395 aa8.66□□□□□ -1.02
SMG6-217ENST00000575338 IGSF1Q8N6C5 1336 aa8.66□□□□□ -1.02
SMG6-217ENST00000575338 TSR2Q969E8 191 aaKnown RBP8.66□□□□□ -1.02
SMG6-217ENST00000575338 COG6Q9Y2V7 657 aa8.66□□□□□ -1.02
SMG6-217ENST00000575338 TRPM3Q9HCF6 1732 aaPredicted RBP8.66□□□□□ -1.02
SMG6-217ENST00000575338 FAM208AQ9UK61 1670 aaKnown RBP8.65□□□□□ -1.02
SMG6-217ENST00000575338 PAK3O75914 559 aaPredicted RBP8.65□□□□□ -1.02
SMG6-217ENST00000575338 ZNF853P0CG23 659 aa8.65□□□□□ -1.02
SMG6-217ENST00000575338 PHACTR3Q96KR7 559 aa8.65□□□□□ -1.02
SMG6-217ENST00000575338 API5Q9BZZ5 524 aaKnown RBP8.65□□□□□ -1.02
SMG6-217ENST00000575338 BABAM1Q9NWV8 329 aa8.65□□□□□ -1.02
SMG6-217ENST00000575338 LAS1LQ9Y4W2 734 aaKnown RBP8.65□□□□□ -1.02
SMG6-217ENST00000575338 LRRC37A3O60309 1634 aa8.65□□□□□ -1.03
SMG6-217ENST00000575338 SLIT3O75094 1523 aa8.64□□□□□ -1.03
SMG6-217ENST00000575338 FBLN1P23142 703 aa8.64□□□□□ -1.03
SMG6-217ENST00000575338 TWISTNBQ3B726 338 aaPredicted RBP8.64□□□□□ -1.03
SMG6-217ENST00000575338 HSP90AB2PQ58FF8 381 aa8.64□□□□□ -1.03
SMG6-217ENST00000575338 ESCO1Q5FWF5 840 aa8.64□□□□□ -1.03
SMG6-217ENST00000575338 PROSER2Q86WR7 435 aaPredicted RBP8.64□□□□□ -1.03
SMG6-217ENST00000575338 PANK1Q8TE04 598 aa8.64□□□□□ -1.03
SMG6-217ENST00000575338 SSH1Q8WYL5 1049 aa8.64□□□□□ -1.03
SMG6-217ENST00000575338 DDRGK1Q96HY6 314 aa8.64□□□□□ -1.03
SMG6-217ENST00000575338 C19orf44Q9H6X5 657 aa8.64□□□□□ -1.03
SMG6-217ENST00000575338 NFAT5O94916 1531 aa8.64□□□□□ -1.03
SMG6-217ENST00000575338 ABCC6O95255 1503 aa8.64□□□□□ -1.03
SMG6-217ENST00000575338 MST1RQ04912 1400 aa8.63□□□□□ -1.03
SMG6-217ENST00000575338 PLEKHG2Q9H7P9 1386 aa8.63□□□□□ -1.03
SMG6-217ENST00000575338 PDE4AP27815 886 aa8.63□□□□□ -1.03
SMG6-217ENST00000575338 HOXC9P31274 260 aa8.63□□□□□ -1.03
SMG6-217ENST00000575338 FAM161AQ3B820 660 aa8.63□□□□□ -1.03
SMG6-217ENST00000575338 ITPRIPQ8IWB1 547 aa8.63□□□□□ -1.03
SMG6-217ENST00000575338 BCL2L13Q9BXK5 485 aa8.63□□□□□ -1.03
SMG6-217ENST00000575338 BACH2Q9BYV9 841 aa8.63□□□□□ -1.03
SMG6-217ENST00000575338 MBIPQ9NS73 344 aa8.63□□□□□ -1.03
SMG6-217ENST00000575338 ALS2Q96Q42 1657 aa8.62□□□□□ -1.03
SMG6-217ENST00000575338 PTPRCP08575 1304 aa8.62□□□□□ -1.03
SMG6-217ENST00000575338 EIF5BO60841 1220 aaKnown RBP8.62□□□□□ -1.03
SMG6-217ENST00000575338 VAMP4O75379 141 aa8.62□□□□□ -1.03
SMG6-217ENST00000575338 TRIM27P14373 513 aa8.62□□□□□ -1.03
SMG6-217ENST00000575338 ATF3P18847 181 aa8.62□□□□□ -1.03
SMG6-217ENST00000575338 IP6K1Q92551 441 aa8.62□□□□□ -1.03
SMG6-217ENST00000575338 NOB1Q9ULX3 412 aaKnown RBP8.62□□□□□ -1.03
SMG6-217ENST00000575338 LMO7Q8WWI1 1683 aa8.62□□□□□ -1.03
SMG6-217ENST00000575338 CAMTA1Q9Y6Y1 1673 aa8.62□□□□□ -1.03
SMG6-217ENST00000575338 N4BP2Q86UW6 1770 aaPredicted RBP8.61□□□□□ -1.03
SMG6-217ENST00000575338 GNAT3A8MTJ3 354 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms