RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 KRT24Q2M2I5 525 aa12.69□□□□□ -0.38
VPS53-206ENST00000570359 MCM10Q7L590 875 aa12.69□□□□□ -0.38
VPS53-206ENST00000570359 ZNF692Q9BU19 519 aaPredicted RBP12.69□□□□□ -0.38
VPS53-206ENST00000570359 ADGRB2O60241 1585 aa12.69□□□□□ -0.38
VPS53-206ENST00000570359 CDC42BPGQ6DT37 1551 aa12.69□□□□□ -0.38
VPS53-206ENST00000570359 MED14O60244 1454 aa12.69□□□□□ -0.38
VPS53-206ENST00000570359 MVPQ14764 893 aaKnown RBP12.69□□□□□ -0.38
VPS53-206ENST00000570359 TMEM57Q8N5G2 664 aa12.69□□□□□ -0.38
VPS53-206ENST00000570359 C1orf115Q9H7X2 142 aa12.69□□□□□ -0.38
VPS53-206ENST00000570359 NLRP6P59044 892 aa12.68□□□□□ -0.38
VPS53-206ENST00000570359 XPCQ01831 940 aaPredicted RBP12.68□□□□□ -0.38
VPS53-206ENST00000570359 MIS18AQ9NYP9 233 aa12.68□□□□□ -0.38
VPS53-206ENST00000570359 ITSN1Q15811 1721 aa12.68□□□□□ -0.38
VPS53-206ENST00000570359 MBIPQ9NS73 344 aa12.68□□□□□ -0.38
VPS53-206ENST00000570359 AMPHP49418 695 aa12.67□□□□□ -0.38
VPS53-206ENST00000570359 LMOD2Q6P5Q4 547 aa12.67□□□□□ -0.38
VPS53-206ENST00000570359 TECPR2O15040 1411 aa12.67□□□□□ -0.38
VPS53-206ENST00000570359 FOXO3O43524 673 aa12.67□□□□□ -0.38
VPS53-206ENST00000570359 FAM161AQ3B820 660 aa12.66□□□□□ -0.38
VPS53-206ENST00000570359 ATF7IPQ6VMQ6 1270 aa12.66□□□□□ -0.38
VPS53-206ENST00000570359 C8orf34Q49A92 452 aa12.66□□□□□ -0.38
VPS53-206ENST00000570359 PDZRN3Q9UPQ7 1066 aa12.66□□□□□ -0.38
VPS53-206ENST00000570359 RGPD8O14715 1765 aaPredicted RBP12.66□□□□□ -0.38
VPS53-206ENST00000570359 USP6P35125 1406 aa12.65□□□□□ -0.38
VPS53-206ENST00000570359 MAP3K19Q56UN5 1328 aa12.65□□□□□ -0.38
VPS53-206ENST00000570359 C8orf58Q8NAV2 365 aa12.65□□□□□ -0.38
VPS53-206ENST00000570359 USHBP1Q8N6Y0 703 aa12.64□□□□□ -0.39
VPS53-206ENST00000570359 ABTB2Q8N961 1025 aa12.64□□□□□ -0.39
VPS53-206ENST00000570359 TBX22Q9Y458 520 aa12.64□□□□□ -0.39
VPS53-206ENST00000570359 KNDC1Q76NI1 1749 aa12.64□□□□□ -0.39
VPS53-206ENST00000570359 SIRT1Q96EB6 747 aa12.64□□□□□ -0.39
VPS53-206ENST00000570359 TWISTNBQ3B726 338 aaPredicted RBP12.64□□□□□ -0.39
VPS53-206ENST00000570359 CDK12Q9NYV4 1490 aaPredicted RBP12.63□□□□□ -0.39
VPS53-206ENST00000570359 MON2Q7Z3U7 1717 aa12.63□□□□□ -0.39
VPS53-206ENST00000570359 SETD1BQ9UPS6 1966 aaKnown RBP12.63□□□□□ -0.39
VPS53-206ENST00000570359 RIMS1Q86UR5 1692 aaKnown RBP12.63□□□□□ -0.39
VPS53-206ENST00000570359 PLEKHG3A1L390 1219 aa12.63□□□□□ -0.39
VPS53-206ENST00000570359 SEC24BO95487 1268 aa12.63□□□□□ -0.39
VPS53-206ENST00000570359 RWDD1Q9H446 243 aaPredicted RBP12.63□□□□□ -0.39
VPS53-206ENST00000570359 DAXXQ9UER7 740 aaPredicted RBP12.63□□□□□ -0.39
VPS53-206ENST00000570359 GNAI1P63096 354 aa12.62□□□□□ -0.39
VPS53-206ENST00000570359 ESCO1Q5FWF5 840 aa12.62□□□□□ -0.39
VPS53-206ENST00000570359 NECTIN2Q92692 538 aa12.62□□□□□ -0.39
VPS53-206ENST00000570359 AKAP12Q02952 1782 aa12.62□□□□□ -0.39
VPS53-206ENST00000570359 IL16Q14005 1332 aa12.61□□□□□ -0.39
VPS53-206ENST00000570359 VAMP4O75379 141 aa12.61□□□□□ -0.39
VPS53-206ENST00000570359 ANKLE2Q86XL3 938 aa12.61□□□□□ -0.39
VPS53-206ENST00000570359 AATKQ6ZMQ8 1374 aa12.61□□□□□ -0.39
VPS53-206ENST00000570359 KIF16BQ96L93 1317 aa12.61□□□□□ -0.39
VPS53-206ENST00000570359 IPO8O15397 1037 aaKnown RBP12.6□□□□□ -0.39
VPS53-206ENST00000570359 DDX19BQ9UMR2 479 aa12.6□□□□□ -0.39
VPS53-206ENST00000570359 DIP2AQ14689 1571 aa12.6□□□□□ -0.39
VPS53-206ENST00000570359 IFT57Q9NWB7 429 aa12.59□□□□□ -0.39
VPS53-206ENST00000570359 DLG5Q8TDM6 1919 aa12.59□□□□□ -0.39
VPS53-206ENST00000570359 CALD1Q05682 793 aaKnown RBP12.59□□□□□ -0.39
VPS53-206ENST00000570359 LMOD3Q0VAK6 560 aa12.59□□□□□ -0.39
VPS53-206ENST00000570359 OVOS2A0A0J9YW53 1432 aa12.59□□□□□ -0.39
VPS53-206ENST00000570359 OVOS2Q6IE36 1432 aa12.59□□□□□ -0.39
VPS53-206ENST00000570359 APBB1O00213 710 aa12.58□□□□□ -0.39
VPS53-206ENST00000570359 CT47B1P0C2W7 299 aaPredicted RBP12.58□□□□□ -0.39
VPS53-206ENST00000570359 RTF1Q92541 710 aaKnown RBP12.58□□□□□ -0.39
VPS53-206ENST00000570359 LNPKQ9C0E8 428 aa12.58□□□□□ -0.39
VPS53-206ENST00000570359 MTHFSDQ2M296 383 aaKnown RBP12.58□□□□□ -0.4
VPS53-206ENST00000570359 MRPL50Q8N5N7 158 aaKnown RBP12.58□□□□□ -0.4
VPS53-206ENST00000570359 CFAP44Q96MT7 982 aa12.58□□□□□ -0.4
VPS53-206ENST00000570359 EYA1Q99502 592 aa12.58□□□□□ -0.4
VPS53-206ENST00000570359 SLIT1O75093 1534 aa12.58□□□□□ -0.4
VPS53-206ENST00000570359 PSME1Q06323 249 aa12.58□□□□□ -0.4
VPS53-206ENST00000570359 ARHGAP23Q9P227 1491 aa12.57□□□□□ -0.4
VPS53-206ENST00000570359 PEAK1Q9H792 1746 aa12.57□□□□□ -0.4
VPS53-206ENST00000570359 CEP170BQ9Y4F5 1589 aaPredicted RBP12.57□□□□□ -0.4
VPS53-206ENST00000570359 PHF8Q9UPP1 1060 aa12.57□□□□□ -0.4
VPS53-206ENST00000570359 ORAI2Q96SN7 254 aa12.56□□□□□ -0.4
VPS53-206ENST00000570359 TSPYL4Q9UJ04 414 aa12.56□□□□□ -0.4
VPS53-206ENST00000570359 ALDH1L2Q3SY69 923 aa12.55□□□□□ -0.4
VPS53-206ENST00000570359 RTL5Q5HYW3 569 aaPredicted RBP12.55□□□□□ -0.4
VPS53-206ENST00000570359 SLC4A10Q6U841 1118 aa12.55□□□□□ -0.4
VPS53-206ENST00000570359 TOPAZ1Q8N9V7 1692 aa12.55□□□□□ -0.4
VPS53-206ENST00000570359 ZBTB40Q9NUA8 1239 aa12.55□□□□□ -0.4
VPS53-206ENST00000570359 TTC21AQ8NDW8 1320 aa12.55□□□□□ -0.4
VPS53-206ENST00000570359 ZNF853P0CG23 659 aa12.54□□□□□ -0.4
VPS53-206ENST00000570359 NCBP3Q53F19 620 aaKnown RBP12.54□□□□□ -0.4
VPS53-206ENST00000570359 SPRYD3Q8NCJ5 442 aa12.54□□□□□ -0.4
VPS53-206ENST00000570359 PTCH1Q13635 1447 aa12.54□□□□□ -0.4
VPS53-206ENST00000570359 NRKQ7Z2Y5 1582 aa12.54□□□□□ -0.4
VPS53-206ENST00000570359 MFAP1P55081 439 aaKnown RBP12.54□□□□□ -0.4
VPS53-206ENST00000570359 ANKRD45Q5TZF3 282 aa12.54□□□□□ -0.4
VPS53-206ENST00000570359 FLT4P35916 1363 aa12.54□□□□□ -0.4
VPS53-206ENST00000570359 HOXC9P31274 260 aa12.53□□□□□ -0.4
VPS53-206ENST00000570359 DDRGK1Q96HY6 314 aa12.53□□□□□ -0.4
VPS53-206ENST00000570359 DDX17Q92841 729 aaKnown RBP12.53□□□□□ -0.4
VPS53-206ENST00000570359 LRRC59Q96AG4 307 aaKnown RBP12.53□□□□□ -0.4
VPS53-206ENST00000570359 F6X3S4 739 aa12.52□□□□□ -0.4
VPS53-206ENST00000570359 SBNO1A3KN83 1393 aa12.52□□□□□ -0.4
VPS53-206ENST00000570359 SLC4A2P04920 1241 aa12.52□□□□□ -0.41
VPS53-206ENST00000570359 PIK3C2AO00443 1686 aa12.51□□□□□ -0.41
VPS53-206ENST00000570359 PROSER2Q86WR7 435 aaPredicted RBP12.51□□□□□ -0.41
VPS53-206ENST00000570359 SSH2Q76I76 1423 aa12.51□□□□□ -0.41
VPS53-206ENST00000570359 USP31Q70CQ4 1352 aa12.5□□□□□ -0.41
VPS53-206ENST00000570359 ZBTB7BO15156 539 aaPredicted RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms