RNA–Protein interactions for RNA: ENST00000567572.5

CMTM3-214, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CMTM3, Length 1,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-214ENST00000567572 USP54Q70EL1 1684 aa22.76■■□□□ 1.23
CMTM3-214ENST00000567572 RTL5Q5HYW3 569 aaPredicted RBP22.76■■□□□ 1.23
CMTM3-214ENST00000567572 USP35Q9P2H5 1018 aa22.76■■□□□ 1.23
CMTM3-214ENST00000567572 C8orf34Q49A92 452 aa22.75■■□□□ 1.23
CMTM3-214ENST00000567572 PEAK1Q9H792 1746 aa22.74■■□□□ 1.23
CMTM3-214ENST00000567572 IL16Q14005 1332 aa22.74■■□□□ 1.23
CMTM3-214ENST00000567572 VIRMAQ69YN4 1812 aaKnown RBP22.73■■□□□ 1.23
CMTM3-214ENST00000567572 TRIM35Q9UPQ4 493 aa22.72■■□□□ 1.23
CMTM3-214ENST00000567572 MARF1Q9Y4F3 1742 aaKnown RBP22.72■■□□□ 1.23
CMTM3-214ENST00000567572 PRKAR2BP31323 418 aa22.71■■□□□ 1.23
CMTM3-214ENST00000567572 SKAP1Q86WV1 359 aa22.7■■□□□ 1.23
CMTM3-214ENST00000567572 NBR1Q14596 966 aa22.7■■□□□ 1.22
CMTM3-214ENST00000567572 RBM33Q96EV2 1170 aaKnown RBP22.7■■□□□ 1.22
CMTM3-214ENST00000567572 COG6Q9Y2V7 657 aa22.69■■□□□ 1.22
CMTM3-214ENST00000567572 PANK1Q8TE04 598 aa22.68■■□□□ 1.22
CMTM3-214ENST00000567572 PHF8Q9UPP1 1060 aa22.68■■□□□ 1.22
CMTM3-214ENST00000567572 RGPD1P0DJD0 1748 aa22.68■■□□□ 1.22
CMTM3-214ENST00000567572 HMOX1P09601 288 aa22.67■■□□□ 1.22
CMTM3-214ENST00000567572 RIPK4P57078 832 aa22.67■■□□□ 1.22
CMTM3-214ENST00000567572 IGHDP01880 384 aa22.67■■□□□ 1.22
CMTM3-214ENST00000567572 DEKP35659 375 aaKnown RBP22.67■■□□□ 1.22
CMTM3-214ENST00000567572 FRAT1Q92837 279 aaPredicted RBP22.66■■□□□ 1.22
CMTM3-214ENST00000567572 EIF4A2Q14240 407 aaKnown RBP22.65■■□□□ 1.22
CMTM3-214ENST00000567572 NEFMP07197 916 aa22.65■■□□□ 1.22
CMTM3-214ENST00000567572 RGS3P49796 1198 aa22.65■■□□□ 1.22
CMTM3-214ENST00000567572 PHACTR3Q96KR7 559 aa22.65■■□□□ 1.22
CMTM3-214ENST00000567572 MAP3K19Q56UN5 1328 aa22.64■■□□□ 1.21
CMTM3-214ENST00000567572 SBNO1A3KN83 1393 aa22.64■■□□□ 1.21
CMTM3-214ENST00000567572 NFE2L2Q16236 605 aa22.63■■□□□ 1.21
CMTM3-214ENST00000567572 ZKSCAN2Q63HK3 967 aa22.63■■□□□ 1.21
CMTM3-214ENST00000567572 FLT4P35916 1363 aa22.62■■□□□ 1.21
CMTM3-214ENST00000567572 NLRP6P59044 892 aa22.61■■□□□ 1.21
CMTM3-214ENST00000567572 HSP90AB2PQ58FF8 381 aa22.61■■□□□ 1.21
CMTM3-214ENST00000567572 C14orf37Q86TY3 774 aa22.61■■□□□ 1.21
CMTM3-214ENST00000567572 MVPQ14764 893 aaKnown RBP22.61■■□□□ 1.21
CMTM3-214ENST00000567572 RWDD1Q9H446 243 aaPredicted RBP22.61■■□□□ 1.21
CMTM3-214ENST00000567572 SOX12O15370 315 aa22.6■■□□□ 1.21
CMTM3-214ENST00000567572 DAXXQ9UER7 740 aaPredicted RBP22.6■■□□□ 1.21
CMTM3-214ENST00000567572 KIF24Q5T7B8 1368 aa22.6■■□□□ 1.21
CMTM3-214ENST00000567572 STRCP1A6NGW2 1772 aa22.59■■□□□ 1.21
CMTM3-214ENST00000567572 PROSER2Q86WR7 435 aaPredicted RBP22.59■■□□□ 1.21
CMTM3-214ENST00000567572 RLBP1P12271 317 aa22.59■■□□□ 1.21
CMTM3-214ENST00000567572 ESCO1Q5FWF5 840 aa22.59■■□□□ 1.21
CMTM3-214ENST00000567572 DLG5Q8TDM6 1919 aa22.58■■□□□ 1.21
CMTM3-214ENST00000567572 ABTB2Q8N961 1025 aa22.58■■□□□ 1.21
CMTM3-214ENST00000567572 TSR2Q969E8 191 aaKnown RBP22.58■■□□□ 1.21
CMTM3-214ENST00000567572 DZIP1LQ8IYY4 767 aaKnown RBP22.57■■□□□ 1.2
CMTM3-214ENST00000567572 ZNF428Q96B54 188 aa22.57■■□□□ 1.2
CMTM3-214ENST00000567572 ARHGEF10O15013 1369 aa22.57■■□□□ 1.2
CMTM3-214ENST00000567572 AEBP1Q8IUX7 1158 aa22.56■■□□□ 1.2
CMTM3-214ENST00000567572 FTSJ3Q8IY81 847 aaKnown RBP22.56■■□□□ 1.2
CMTM3-214ENST00000567572 KIF1AQ12756 1690 aa22.55■■□□□ 1.2
CMTM3-214ENST00000567572 KIF16BQ96L93 1317 aa22.55■■□□□ 1.2
CMTM3-214ENST00000567572 NUTM2GQ5VZR2 741 aa22.55■■□□□ 1.2
CMTM3-214ENST00000567572 SULT6B1Q6IMI4 303 aa22.55■■□□□ 1.2
CMTM3-214ENST00000567572 PCDHB15Q9Y5E8 787 aa22.55■■□□□ 1.2
CMTM3-214ENST00000567572 BCL11AQ9H165 835 aa22.54■■□□□ 1.2
CMTM3-214ENST00000567572 C19orf44Q9H6X5 657 aa22.54■■□□□ 1.2
CMTM3-214ENST00000567572 SMC4Q9NTJ3 1288 aa22.54■■□□□ 1.2
CMTM3-214ENST00000567572 NFAT5O94916 1531 aa22.54■■□□□ 1.2
CMTM3-214ENST00000567572 NCOA3Q9Y6Q9 1424 aa22.54■■□□□ 1.2
CMTM3-214ENST00000567572 C1orf167Q5SNV9 1468 aa22.53■■□□□ 1.2
CMTM3-214ENST00000567572 EXOSC9Q06265 439 aaKnown RBP22.53■■□□□ 1.2
CMTM3-214ENST00000567572 ORAI2Q96SN7 254 aa22.53■■□□□ 1.2
CMTM3-214ENST00000567572 DDX19BQ9UMR2 479 aa22.53■■□□□ 1.2
CMTM3-214ENST00000567572 LMTK3Q96Q04 1460 aa22.53■■□□□ 1.2
CMTM3-214ENST00000567572 KDM4FA0A1W2PPD8 638 aa22.53■■□□□ 1.2
CMTM3-214ENST00000567572 AMPHP49418 695 aa22.53■■□□□ 1.2
CMTM3-214ENST00000567572 HSPA2P54652 639 aa22.53■■□□□ 1.2
CMTM3-214ENST00000567572 CALD1Q05682 793 aaKnown RBP22.53■■□□□ 1.2
CMTM3-214ENST00000567572 PSME1Q06323 249 aa22.53■■□□□ 1.2
CMTM3-214ENST00000567572 LMOD3Q0VAK6 560 aa22.53■■□□□ 1.2
CMTM3-214ENST00000567572 ALDH1L2Q3SY69 923 aa22.53■■□□□ 1.2
CMTM3-214ENST00000567572 DCCP43146 1447 aa22.53■■□□□ 1.2
CMTM3-214ENST00000567572 KDRP35968 1356 aa22.52■■□□□ 1.2
CMTM3-214ENST00000567572 BCL2L13Q9BXK5 485 aa22.52■■□□□ 1.2
CMTM3-214ENST00000567572 TRPM3Q9HCF6 1732 aaPredicted RBP22.52■■□□□ 1.2
CMTM3-214ENST00000567572 LAS1LQ9Y4W2 734 aaKnown RBP22.52■■□□□ 1.2
CMTM3-214ENST00000567572 RTL1A6NKG5 1358 aa22.52■■□□□ 1.19
CMTM3-214ENST00000567572 BRPF1P55201 1214 aaPredicted RBP22.51■■□□□ 1.19
CMTM3-214ENST00000567572 TMEM94Q12767 1356 aa22.51■■□□□ 1.19
CMTM3-214ENST00000567572 LTN1O94822 1766 aa22.51■■□□□ 1.19
CMTM3-214ENST00000567572 HDAC1Q13547 482 aaPredicted RBP22.51■■□□□ 1.19
CMTM3-214ENST00000567572 ATF7IPQ6VMQ6 1270 aa22.51■■□□□ 1.19
CMTM3-214ENST00000567572 IPO8O15397 1037 aaKnown RBP22.5■■□□□ 1.19
CMTM3-214ENST00000567572 HOXC9P31274 260 aa22.5■■□□□ 1.19
CMTM3-214ENST00000567572 IGSF1Q8N6C5 1336 aa22.5■■□□□ 1.19
CMTM3-214ENST00000567572 PHRF1Q9P1Y6 1649 aaKnown RBP22.49■■□□□ 1.19
CMTM3-214ENST00000567572 SSH1Q8WYL5 1049 aa22.49■■□□□ 1.19
CMTM3-214ENST00000567572 MST1RQ04912 1400 aa22.48■■□□□ 1.19
CMTM3-214ENST00000567572 TRIM27P14373 513 aa22.48■■□□□ 1.19
CMTM3-214ENST00000567572 THUMPD2Q9BTF0 503 aaKnown RBP22.48■■□□□ 1.19
CMTM3-214ENST00000567572 IFT57Q9NWB7 429 aa22.48■■□□□ 1.19
CMTM3-214ENST00000567572 TNNQ9UQP3 1299 aa22.48■■□□□ 1.19
CMTM3-214ENST00000567572 USP19O94966 1318 aa22.48■■□□□ 1.19
CMTM3-214ENST00000567572 STRCQ7RTU9 1775 aa22.48■■□□□ 1.19
CMTM3-214ENST00000567572 ZNF853P0CG23 659 aa22.47■■□□□ 1.19
CMTM3-214ENST00000567572 PDZRN3Q9UPQ7 1066 aa22.47■■□□□ 1.19
CMTM3-214ENST00000567572 SLIT3O75094 1523 aa22.47■■□□□ 1.19
CMTM3-214ENST00000567572 FOXO3O43524 673 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms