RNA–Protein interactions for RNA: ENST00000560349.1

CARMIL3-203, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 1 (best)

Gene CARMIL3, Length 2,664 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-203ENST00000560349 MAP3K19Q56UN5 1328 aa18.19■□□□□ 0.5
CARMIL3-203ENST00000560349 SSH2Q76I76 1423 aa18.18■□□□□ 0.5
CARMIL3-203ENST00000560349 PNNQ9H307 717 aaKnown RBP18.18■□□□□ 0.5
CARMIL3-203ENST00000560349 ELL2O00472 640 aaPredicted RBP18.17■□□□□ 0.5
CARMIL3-203ENST00000560349 XPCQ01831 940 aaPredicted RBP18.17■□□□□ 0.5
CARMIL3-203ENST00000560349 SMC4Q9NTJ3 1288 aa18.17■□□□□ 0.5
CARMIL3-203ENST00000560349 TCERG1O14776 1098 aaKnown RBP18.16■□□□□ 0.5
CARMIL3-203ENST00000560349 SSH1Q8WYL5 1049 aa18.16■□□□□ 0.5
CARMIL3-203ENST00000560349 PEAK1Q9H792 1746 aa18.16■□□□□ 0.5
CARMIL3-203ENST00000560349 ABTB2Q8N961 1025 aa18.16■□□□□ 0.5
CARMIL3-203ENST00000560349 KDM2BQ8NHM5 1336 aa18.15■□□□□ 0.5
CARMIL3-203ENST00000560349 ESCO1Q5FWF5 840 aa18.15■□□□□ 0.5
CARMIL3-203ENST00000560349 NALCNQ8IZF0 1738 aa18.15■□□□□ 0.5
CARMIL3-203ENST00000560349 ZNF142P52746 1687 aaPredicted RBP18.14■□□□□ 0.49
CARMIL3-203ENST00000560349 PIK3R4Q99570 1358 aa18.14■□□□□ 0.49
CARMIL3-203ENST00000560349 ZBTB7CA1YPR0 619 aa18.14■□□□□ 0.49
CARMIL3-203ENST00000560349 AMPHP49418 695 aa18.14■□□□□ 0.49
CARMIL3-203ENST00000560349 PDE3AQ14432 1141 aa18.14■□□□□ 0.49
CARMIL3-203ENST00000560349 LTV1Q96GA3 475 aaPredicted RBP18.14■□□□□ 0.49
CARMIL3-203ENST00000560349 SETD1BQ9UPS6 1966 aaKnown RBP18.14■□□□□ 0.49
CARMIL3-203ENST00000560349 NPHP4O75161 1426 aaPredicted RBP18.13■□□□□ 0.49
CARMIL3-203ENST00000560349 IGHDP01880 384 aa18.13■□□□□ 0.49
CARMIL3-203ENST00000560349 PHF8Q9UPP1 1060 aa18.13■□□□□ 0.49
CARMIL3-203ENST00000560349 TTC21AQ8NDW8 1320 aa18.13■□□□□ 0.49
CARMIL3-203ENST00000560349 PIK3C2AO00443 1686 aa18.12■□□□□ 0.49
CARMIL3-203ENST00000560349 RGS3P49796 1198 aa18.12■□□□□ 0.49
CARMIL3-203ENST00000560349 TSPYL6Q8N831 410 aa18.12■□□□□ 0.49
CARMIL3-203ENST00000560349 CHD2O14647 1828 aaKnown RBP18.12■□□□□ 0.49
CARMIL3-203ENST00000560349 ORAI2Q96SN7 254 aa18.12■□□□□ 0.49
CARMIL3-203ENST00000560349 USP31Q70CQ4 1352 aa18.12■□□□□ 0.49
CARMIL3-203ENST00000560349 MCM10Q7L590 875 aa18.11■□□□□ 0.49
CARMIL3-203ENST00000560349 FOXO3O43524 673 aa18.11■□□□□ 0.49
CARMIL3-203ENST00000560349 NCBP3Q53F19 620 aaKnown RBP18.11■□□□□ 0.49
CARMIL3-203ENST00000560349 FTSJ3Q8IY81 847 aaKnown RBP18.11■□□□□ 0.49
CARMIL3-203ENST00000560349 FMN2Q9NZ56 1722 aa18.1■□□□□ 0.49
CARMIL3-203ENST00000560349 CENPQQ7L2Z9 268 aaPredicted RBP18.1■□□□□ 0.49
CARMIL3-203ENST00000560349 MBIPQ9NS73 344 aa18.1■□□□□ 0.49
CARMIL3-203ENST00000560349 NOB1Q9ULX3 412 aaKnown RBP18.1■□□□□ 0.49
CARMIL3-203ENST00000560349 IL16Q14005 1332 aa18.1■□□□□ 0.49
CARMIL3-203ENST00000560349 HSPA2P54652 639 aa18.1■□□□□ 0.49
CARMIL3-203ENST00000560349 TRIM27P14373 513 aa18.09■□□□□ 0.49
CARMIL3-203ENST00000560349 ANKARQ7Z5J8 1434 aa18.09■□□□□ 0.49
CARMIL3-203ENST00000560349 LMOD2Q6P5Q4 547 aa18.09■□□□□ 0.49
CARMIL3-203ENST00000560349 NPM2Q86SE8 214 aaKnown RBP18.09■□□□□ 0.49
CARMIL3-203ENST00000560349 ZKSCAN2Q63HK3 967 aa18.08■□□□□ 0.49
CARMIL3-203ENST00000560349 KRT24Q2M2I5 525 aa18.08■□□□□ 0.48
CARMIL3-203ENST00000560349 PCDHB15Q9Y5E8 787 aa18.08■□□□□ 0.48
CARMIL3-203ENST00000560349 PSME1Q06323 249 aa18.07■□□□□ 0.48
CARMIL3-203ENST00000560349 NOP58Q9Y2X3 529 aaKnown RBP18.07■□□□□ 0.48
CARMIL3-203ENST00000560349 DLG5Q8TDM6 1919 aa18.07■□□□□ 0.48
CARMIL3-203ENST00000560349 USHBP1Q8N6Y0 703 aa18.07■□□□□ 0.48
CARMIL3-203ENST00000560349 PROSER2Q86WR7 435 aaPredicted RBP18.06■□□□□ 0.48
CARMIL3-203ENST00000560349 DZIP1LQ8IYY4 767 aaKnown RBP18.06■□□□□ 0.48
CARMIL3-203ENST00000560349 EYA1Q99502 592 aa18.06■□□□□ 0.48
CARMIL3-203ENST00000560349 FLT4P35916 1363 aa18.06■□□□□ 0.48
CARMIL3-203ENST00000560349 ADGRL3Q9HAR2 1447 aa18.06■□□□□ 0.48
CARMIL3-203ENST00000560349 PDE4AP27815 886 aa18.06■□□□□ 0.48
CARMIL3-203ENST00000560349 ITPRIPQ8IWB1 547 aa18.06■□□□□ 0.48
CARMIL3-203ENST00000560349 C8orf58Q8NAV2 365 aa18.06■□□□□ 0.48
CARMIL3-203ENST00000560349 MIS18AQ9NYP9 233 aa18.06■□□□□ 0.48
CARMIL3-203ENST00000560349 SBNO1A3KN83 1393 aa18.05■□□□□ 0.48
CARMIL3-203ENST00000560349 HOXC9P31274 260 aa18.04■□□□□ 0.48
CARMIL3-203ENST00000560349 GNAI1P63096 354 aa18.04■□□□□ 0.48
CARMIL3-203ENST00000560349 MVPQ14764 893 aaKnown RBP18.04■□□□□ 0.48
CARMIL3-203ENST00000560349 ANO8Q9HCE9 1232 aaPredicted RBP18.04■□□□□ 0.48
CARMIL3-203ENST00000560349 MTHFSDQ2M296 383 aaKnown RBP18.03■□□□□ 0.48
CARMIL3-203ENST00000560349 ATF7IPQ6VMQ6 1270 aa18.03■□□□□ 0.48
CARMIL3-203ENST00000560349 DDX17Q92841 729 aaKnown RBP18.03■□□□□ 0.48
CARMIL3-203ENST00000560349 IFT57Q9NWB7 429 aa18.03■□□□□ 0.48
CARMIL3-203ENST00000560349 TMEM57Q8N5G2 664 aa18.03■□□□□ 0.48
CARMIL3-203ENST00000560349 VAMP4O75379 141 aa18.02■□□□□ 0.48
CARMIL3-203ENST00000560349 CT47B1P0C2W7 299 aaPredicted RBP18.02■□□□□ 0.48
CARMIL3-203ENST00000560349 ZNF853P0CG23 659 aa18.02■□□□□ 0.47
CARMIL3-203ENST00000560349 CFAP44Q96MT7 982 aa18.02■□□□□ 0.47
CARMIL3-203ENST00000560349 LMOD3Q0VAK6 560 aa18.01■□□□□ 0.47
CARMIL3-203ENST00000560349 TWISTNBQ3B726 338 aaPredicted RBP18.01■□□□□ 0.47
CARMIL3-203ENST00000560349 MARF1Q9Y4F3 1742 aaKnown RBP18■□□□□ 0.47
CARMIL3-203ENST00000560349 CALD1Q05682 793 aaKnown RBP18■□□□□ 0.47
CARMIL3-203ENST00000560349 BACH2Q9BYV9 841 aa18■□□□□ 0.47
CARMIL3-203ENST00000560349 IPO9Q96P70 1041 aaKnown RBP17.99■□□□□ 0.47
CARMIL3-203ENST00000560349 RGPD1P0DJD0 1748 aa17.98■□□□□ 0.47
CARMIL3-203ENST00000560349 ARHGEF10O15013 1369 aa17.98■□□□□ 0.47
CARMIL3-203ENST00000560349 IGSF1Q8N6C5 1336 aa17.98■□□□□ 0.47
CARMIL3-203ENST00000560349 ANP32AP39687 249 aaKnown RBP17.98■□□□□ 0.47
CARMIL3-203ENST00000560349 KIF16BQ96L93 1317 aa17.97■□□□□ 0.47
CARMIL3-203ENST00000560349 MS4A1P11836 297 aa17.96■□□□□ 0.47
CARMIL3-203ENST00000560349 MRPL50Q8N5N7 158 aaKnown RBP17.96■□□□□ 0.47
CARMIL3-203ENST00000560349 LRRC59Q96AG4 307 aaKnown RBP17.96■□□□□ 0.47
CARMIL3-203ENST00000560349 ALDH1L2Q3SY69 923 aa17.95■□□□□ 0.46
CARMIL3-203ENST00000560349 C1orf115Q9H7X2 142 aa17.95■□□□□ 0.46
CARMIL3-203ENST00000560349 NBR1Q14596 966 aa17.95■□□□□ 0.46
CARMIL3-203ENST00000560349 RTF1Q92541 710 aaKnown RBP17.95■□□□□ 0.46
CARMIL3-203ENST00000560349 TMEM94Q12767 1356 aa17.94■□□□□ 0.46
CARMIL3-203ENST00000560349 KDRP35968 1356 aa17.94■□□□□ 0.46
CARMIL3-203ENST00000560349 IPO8O15397 1037 aaKnown RBP17.93■□□□□ 0.46
CARMIL3-203ENST00000560349 NBPF6Q5VWK0 638 aa17.93■□□□□ 0.46
CARMIL3-203ENST00000560349 NBPF4Q96M43 638 aa17.93■□□□□ 0.46
CARMIL3-203ENST00000560349 DDX19BQ9UMR2 479 aa17.93■□□□□ 0.46
CARMIL3-203ENST00000560349 KRT28Q7Z3Y7 464 aa17.92■□□□□ 0.46
CARMIL3-203ENST00000560349 CHL1O00533 1208 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms