RNA–Protein interactions for RNA: ENST00000560328.1

NEO1-208, Transcript of neogenin 1, human

TSL 1 (best)

Gene NEO1, Length 5,895 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NEO1-208	ENST00000560328	TBC1D2B	Q9UPU7	963 aa		11.27	□□□□□ -0.6
NEO1-208	ENST00000560328	ADAMTS12	P58397	1594 aa		11.27	□□□□□ -0.61
NEO1-208	ENST00000560328	DUSP27	Q5VZP5	1158 aa		11.27	□□□□□ -0.61
NEO1-208	ENST00000560328	CNNM1	Q9NRU3	951 aa		11.27	□□□□□ -0.61
NEO1-208	ENST00000560328	IFT57	Q9NWB7	429 aa		11.27	□□□□□ -0.61
NEO1-208	ENST00000560328	DUOX2	Q9NRD8	1548 aa		11.27	□□□□□ -0.61
NEO1-208	ENST00000560328	FOXO3	O43524	673 aa		11.27	□□□□□ -0.61
NEO1-208	ENST00000560328	BACH2	Q9BYV9	841 aa		11.27	□□□□□ -0.61
NEO1-208	ENST00000560328	KIAA0556	O60303	1618 aa		11.26	□□□□□ -0.61
NEO1-208	ENST00000560328	SRGAP3	O43295	1099 aa		11.26	□□□□□ -0.61
NEO1-208	ENST00000560328	RARS	P54136	660 aa	Known RBP	11.26	□□□□□ -0.61
NEO1-208	ENST00000560328	NFKBIB	Q15653	356 aa		11.26	□□□□□ -0.61
NEO1-208	ENST00000560328	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.26	□□□□□ -0.61
NEO1-208	ENST00000560328	USHBP1	Q8N6Y0	703 aa		11.26	□□□□□ -0.61
NEO1-208	ENST00000560328	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	11.26	□□□□□ -0.61
NEO1-208	ENST00000560328	MAPKBP1	O60336	1514 aa		11.26	□□□□□ -0.61
NEO1-208	ENST00000560328	ITSN2	Q9NZM3	1697 aa		11.26	□□□□□ -0.61
NEO1-208	ENST00000560328	SSH1	Q8WYL5	1049 aa		11.25	□□□□□ -0.61
NEO1-208	ENST00000560328	RABEP1	Q15276	862 aa		11.25	□□□□□ -0.61
NEO1-208	ENST00000560328	CCDC158	Q5M9N0	1113 aa		11.25	□□□□□ -0.61
NEO1-208	ENST00000560328	RPAP2	Q8IXW5	612 aa	Predicted RBP	11.25	□□□□□ -0.61
NEO1-208	ENST00000560328	ABCC11	Q96J66	1382 aa		11.25	□□□□□ -0.61
NEO1-208	ENST00000560328	TTC39A	Q5SRH9	613 aa		11.25	□□□□□ -0.61
NEO1-208	ENST00000560328	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.24	□□□□□ -0.61
NEO1-208	ENST00000560328	MAP4K4	O95819	1239 aa	Predicted RBP	11.24	□□□□□ -0.61
NEO1-208	ENST00000560328	SAFB	Q15424	915 aa	Known RBP eCLIP	11.24	□□□□□ -0.61
NEO1-208	ENST00000560328	WDR7	Q9Y4E6	1490 aa		11.24	□□□□□ -0.61
NEO1-208	ENST00000560328	C20orf194	Q5TEA3	1177 aa		11.24	□□□□□ -0.61
NEO1-208	ENST00000560328	TRAPPC8	Q9Y2L5	1435 aa		11.24	□□□□□ -0.61
NEO1-208	ENST00000560328	A2M	P01023	1474 aa		11.24	□□□□□ -0.61
NEO1-208	ENST00000560328	PIP4K2B	P78356	416 aa		11.24	□□□□□ -0.61
NEO1-208	ENST00000560328	NSD2	O96028	1365 aa		11.24	□□□□□ -0.61
NEO1-208	ENST00000560328	TAF7	Q15545	349 aa	Predicted RBP	11.24	□□□□□ -0.61
NEO1-208	ENST00000560328	ALDH1L2	Q3SY69	923 aa		11.24	□□□□□ -0.61
NEO1-208	ENST00000560328	NKTR	P30414	1462 aa	Known RBP	11.23	□□□□□ -0.61
NEO1-208	ENST00000560328	WDR62	O43379	1518 aa		11.23	□□□□□ -0.61
NEO1-208	ENST00000560328	MCM2	P49736	904 aa		11.23	□□□□□ -0.61
NEO1-208	ENST00000560328	TCOF1	Q13428	1488 aa	Known RBP	11.23	□□□□□ -0.61
NEO1-208	ENST00000560328	TNR	Q92752	1358 aa		11.23	□□□□□ -0.61
NEO1-208	ENST00000560328	CCDC57	Q2TAC2	916 aa		11.23	□□□□□ -0.61
NEO1-208	ENST00000560328	AACS	Q86V21	672 aa		11.23	□□□□□ -0.61
NEO1-208	ENST00000560328	IL1RAPL2	Q9NP60	686 aa		11.23	□□□□□ -0.61
NEO1-208	ENST00000560328	ARID3A	Q99856	593 aa		11.22	□□□□□ -0.61
NEO1-208	ENST00000560328	CTDP1	Q9Y5B0	961 aa	Predicted RBP	11.22	□□□□□ -0.61
NEO1-208	ENST00000560328	TPM3	P06753	285 aa		11.22	□□□□□ -0.61
NEO1-208	ENST00000560328	AMOT	Q4VCS5	1084 aa		11.22	□□□□□ -0.61
NEO1-208	ENST00000560328	ZNF518A	Q6AHZ1	1483 aa		11.22	□□□□□ -0.61
NEO1-208	ENST00000560328	CCDC73	Q6ZRK6	1079 aa		11.22	□□□□□ -0.61
NEO1-208	ENST00000560328	HOOK1	Q9UJC3	728 aa	Known RBP	11.22	□□□□□ -0.61
NEO1-208	ENST00000560328	ACE	P12821	1306 aa		11.21	□□□□□ -0.61
NEO1-208	ENST00000560328	TSR1	Q2NL82	804 aa	Known RBP	11.21	□□□□□ -0.61
NEO1-208	ENST00000560328	KLHL34	Q8N239	644 aa		11.21	□□□□□ -0.61
NEO1-208	ENST00000560328	RALGAPB	Q86X10	1494 aa		11.21	□□□□□ -0.61
NEO1-208	ENST00000560328	SART3	Q15020	963 aa	Known RBP	11.21	□□□□□ -0.62
NEO1-208	ENST00000560328	SASS6	Q6UVJ0	657 aa		11.21	□□□□□ -0.62
NEO1-208	ENST00000560328	KDM4A	O75164	1064 aa		11.2	□□□□□ -0.62
NEO1-208	ENST00000560328	TPM2	P07951	284 aa		11.2	□□□□□ -0.62
NEO1-208	ENST00000560328	MPRIP	Q6WCQ1	1025 aa		11.2	□□□□□ -0.62
NEO1-208	ENST00000560328	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	11.2	□□□□□ -0.62
NEO1-208	ENST00000560328	EXOC6B	Q9Y2D4	811 aa		11.2	□□□□□ -0.62
NEO1-208	ENST00000560328	GNL3L	Q9NVN8	582 aa	Known RBP	11.2	□□□□□ -0.62
NEO1-208	ENST00000560328	PRAG1	Q86YV5	1406 aa		11.2	□□□□□ -0.62
NEO1-208	ENST00000560328	KIF21A	Q7Z4S6	1674 aa		11.2	□□□□□ -0.62
NEO1-208	ENST00000560328	PTCD1	O75127	700 aa	Known RBP	11.2	□□□□□ -0.62
NEO1-208	ENST00000560328	NOC3L	Q8WTT2	800 aa	Known RBP	11.2	□□□□□ -0.62
NEO1-208	ENST00000560328	TPM1	P09493	284 aa		11.2	□□□□□ -0.62
NEO1-208	ENST00000560328	NCBP3	Q53F19	620 aa	Known RBP	11.2	□□□□□ -0.62
NEO1-208	ENST00000560328	CCDC47	Q96A33	483 aa	Known RBP	11.2	□□□□□ -0.62
NEO1-208	ENST00000560328	MPHOSPH8	Q99549	860 aa		11.2	□□□□□ -0.62
NEO1-208	ENST00000560328	MTMR7	Q9Y216	660 aa		11.2	□□□□□ -0.62
NEO1-208	ENST00000560328	FBLN1	P23142	703 aa		11.19	□□□□□ -0.62
NEO1-208	ENST00000560328	CYP46A1	Q9Y6A2	500 aa		11.19	□□□□□ -0.62
NEO1-208	ENST00000560328	KRT28	Q7Z3Y7	464 aa		11.19	□□□□□ -0.62
NEO1-208	ENST00000560328	TCEAL9	Q9UHQ7	104 aa		11.19	□□□□□ -0.62
NEO1-208	ENST00000560328	TTC21B	Q7Z4L5	1316 aa		11.19	□□□□□ -0.62
NEO1-208	ENST00000560328	RRP12	Q5JTH9	1297 aa	Known RBP	11.19	□□□□□ -0.62
NEO1-208	ENST00000560328	EIF4G3	O43432	1585 aa	Known RBP	11.19	□□□□□ -0.62
NEO1-208	ENST00000560328	ANKRD36B	Q8N2N9	1353 aa		11.19	□□□□□ -0.62
NEO1-208	ENST00000560328	STARD3NL	O95772	234 aa		11.19	□□□□□ -0.62
NEO1-208	ENST00000560328	FKBP4	Q02790	459 aa	Known RBP eCLIP	11.19	□□□□□ -0.62
NEO1-208	ENST00000560328	CEP126	Q9P2H0	1117 aa		11.19	□□□□□ -0.62
NEO1-208	ENST00000560328	TEX14	Q8IWB6	1497 aa		11.19	□□□□□ -0.62
NEO1-208	ENST00000560328	XBP1	P17861	261 aa		11.19	□□□□□ -0.62
NEO1-208	ENST00000560328	PDC	P20941	246 aa		11.18	□□□□□ -0.62
NEO1-208	ENST00000560328	NUTM1	Q86Y26	1132 aa		11.18	□□□□□ -0.62
NEO1-208	ENST00000560328	NUP160	Q12769	1436 aa		11.18	□□□□□ -0.62
NEO1-208	ENST00000560328		F6X3S4	739 aa		11.18	□□□□□ -0.62
NEO1-208	ENST00000560328	TRAK2	O60296	914 aa		11.18	□□□□□ -0.62
NEO1-208	ENST00000560328	BRMS1	Q9HCU9	246 aa		11.18	□□□□□ -0.62
NEO1-208	ENST00000560328	CFAP43	Q8NDM7	1665 aa		11.18	□□□□□ -0.62
NEO1-208	ENST00000560328	SAMD1	Q6SPF0	538 aa	Predicted RBP	11.18	□□□□□ -0.62
NEO1-208	ENST00000560328	CWC27	Q6UX04	472 aa	Known RBP	11.18	□□□□□ -0.62
NEO1-208	ENST00000560328	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.18	□□□□□ -0.62
NEO1-208	ENST00000560328	TMOD3	Q9NYL9	352 aa		11.18	□□□□□ -0.62
NEO1-208	ENST00000560328	UHRF1BP1L	A0JNW5	1464 aa		11.18	□□□□□ -0.62
NEO1-208	ENST00000560328		K7ELQ4	463 aa	Predicted RBP	11.17	□□□□□ -0.62
NEO1-208	ENST00000560328	LARP1	Q6PKG0	1096 aa	Known RBP	11.17	□□□□□ -0.62
NEO1-208	ENST00000560328	LRPPRC	P42704	1394 aa	Known RBP	11.17	□□□□□ -0.62
NEO1-208	ENST00000560328	ANKRD20A12P	Q8NF67	263 aa		11.17	□□□□□ -0.62
NEO1-208	ENST00000560328	PRPF40A	O75400	957 aa	Known RBP	11.17	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms