RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 GGNBP2Q9H3C7 697 aa9.34□□□□□ -0.91
VPS13C-206ENST00000558338 MON2Q7Z3U7 1717 aa9.34□□□□□ -0.91
VPS13C-206ENST00000558338 DIAPH1O60610 1272 aaKnown RBP9.34□□□□□ -0.91
VPS13C-206ENST00000558338 EIF5BO60841 1220 aaKnown RBP9.34□□□□□ -0.91
VPS13C-206ENST00000558338 RRP7AQ9Y3A4 280 aaKnown RBP9.34□□□□□ -0.91
VPS13C-206ENST00000558338 ITSN1Q15811 1721 aa9.33□□□□□ -0.92
VPS13C-206ENST00000558338 POTEB2H3BUK9 544 aa9.33□□□□□ -0.92
VPS13C-206ENST00000558338 NEFMP07197 916 aa9.33□□□□□ -0.92
VPS13C-206ENST00000558338 ZRANB1Q9UGI0 708 aa9.33□□□□□ -0.92
VPS13C-206ENST00000558338 UBR1Q8IWV7 1749 aa9.33□□□□□ -0.92
VPS13C-206ENST00000558338 TNRQ92752 1358 aa9.33□□□□□ -0.92
VPS13C-206ENST00000558338 AKAP12Q02952 1782 aa9.32□□□□□ -0.92
VPS13C-206ENST00000558338 U2SURPO15042 1029 aaKnown RBP9.32□□□□□ -0.92
VPS13C-206ENST00000558338 TMPOP42166 694 aaKnown RBP9.32□□□□□ -0.92
VPS13C-206ENST00000558338 PLEKHF1Q96S99 279 aa9.32□□□□□ -0.92
VPS13C-206ENST00000558338 CDK12Q9NYV4 1490 aaPredicted RBP9.32□□□□□ -0.92
VPS13C-206ENST00000558338 CPSF1Q10570 1443 aaKnown RBP9.32□□□□□ -0.92
VPS13C-206ENST00000558338 LRRC7Q96NW7 1537 aa9.32□□□□□ -0.92
VPS13C-206ENST00000558338 PAK3O75914 559 aaPredicted RBP9.32□□□□□ -0.92
VPS13C-206ENST00000558338 CABP1Q9NZU7 370 aa9.32□□□□□ -0.92
VPS13C-206ENST00000558338 WASLO00401 505 aaPredicted RBP9.31□□□□□ -0.92
VPS13C-206ENST00000558338 FCHSD2O94868 740 aa9.31□□□□□ -0.92
VPS13C-206ENST00000558338 FRAT1Q92837 279 aaPredicted RBP9.31□□□□□ -0.92
VPS13C-206ENST00000558338 PPIP5K1Q6PFW1 1433 aa9.31□□□□□ -0.92
VPS13C-206ENST00000558338 AATKQ6ZMQ8 1374 aa9.31□□□□□ -0.92
VPS13C-206ENST00000558338 CALD1Q05682 793 aaKnown RBP9.3□□□□□ -0.92
VPS13C-206ENST00000558338 RTL5Q5HYW3 569 aaPredicted RBP9.3□□□□□ -0.92
VPS13C-206ENST00000558338 ZKSCAN2Q63HK3 967 aa9.3□□□□□ -0.92
VPS13C-206ENST00000558338 COG6Q9Y2V7 657 aa9.3□□□□□ -0.92
VPS13C-206ENST00000558338 C3P01024 1663 aa9.3□□□□□ -0.92
VPS13C-206ENST00000558338 GALR2O43603 387 aaPredicted RBP9.3□□□□□ -0.92
VPS13C-206ENST00000558338 MLECQ14165 292 aa9.3□□□□□ -0.92
VPS13C-206ENST00000558338 PANK1Q8TE04 598 aa9.3□□□□□ -0.92
VPS13C-206ENST00000558338 ZNF428Q96B54 188 aa9.3□□□□□ -0.92
VPS13C-206ENST00000558338 MAP2P11137 1827 aaKnown RBP9.29□□□□□ -0.92
VPS13C-206ENST00000558338 KIF16BQ96L93 1317 aa9.29□□□□□ -0.92
VPS13C-206ENST00000558338 PPM1GO15355 546 aaPredicted RBP9.29□□□□□ -0.92
VPS13C-206ENST00000558338 C8orf34Q49A92 452 aa9.29□□□□□ -0.92
VPS13C-206ENST00000558338 FTSJ3Q8IY81 847 aaKnown RBP9.29□□□□□ -0.92
VPS13C-206ENST00000558338 TMEM2Q9UHN6 1383 aa9.29□□□□□ -0.92
VPS13C-206ENST00000558338 TOPAZ1Q8N9V7 1692 aa9.29□□□□□ -0.92
VPS13C-206ENST00000558338 MVPQ14764 893 aaKnown RBP9.28□□□□□ -0.92
VPS13C-206ENST00000558338 RWDD1Q9H446 243 aaPredicted RBP9.28□□□□□ -0.92
VPS13C-206ENST00000558338 TRIM35Q9UPQ4 493 aa9.28□□□□□ -0.92
VPS13C-206ENST00000558338 METP08581 1390 aa9.28□□□□□ -0.92
VPS13C-206ENST00000558338 NRKQ7Z2Y5 1582 aa9.28□□□□□ -0.92
VPS13C-206ENST00000558338 PLEKHG1Q9ULL1 1385 aa9.28□□□□□ -0.92
VPS13C-206ENST00000558338 RGS3P49796 1198 aa9.28□□□□□ -0.92
VPS13C-206ENST00000558338 RIPK4P57078 832 aa9.28□□□□□ -0.92
VPS13C-206ENST00000558338 WAPLQ7Z5K2 1190 aa9.28□□□□□ -0.92
VPS13C-206ENST00000558338 DZIP1LQ8IYY4 767 aaKnown RBP9.28□□□□□ -0.92
VPS13C-206ENST00000558338 SMC4Q9NTJ3 1288 aa9.28□□□□□ -0.92
VPS13C-206ENST00000558338 USP35Q9P2H5 1018 aa9.28□□□□□ -0.92
VPS13C-206ENST00000558338 IPO8O15397 1037 aaKnown RBP9.27□□□□□ -0.93
VPS13C-206ENST00000558338 LMOD3Q0VAK6 560 aa9.27□□□□□ -0.93
VPS13C-206ENST00000558338 ALDH1L2Q3SY69 923 aa9.27□□□□□ -0.93
VPS13C-206ENST00000558338 RSPH6AQ9H0K4 717 aa9.27□□□□□ -0.93
VPS13C-206ENST00000558338 DDX19BQ9UMR2 479 aa9.27□□□□□ -0.93
VPS13C-206ENST00000558338 CCDC61Q9Y6R9 512 aa9.27□□□□□ -0.93
VPS13C-206ENST00000558338 DIP2AQ14689 1571 aa9.26□□□□□ -0.93
VPS13C-206ENST00000558338 IGHDP01880 384 aa9.26□□□□□ -0.93
VPS13C-206ENST00000558338 EXOSC9Q06265 439 aaKnown RBP9.26□□□□□ -0.93
VPS13C-206ENST00000558338 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.26□□□□□ -0.93
VPS13C-206ENST00000558338 NUDT16Q96DE0 195 aaKnown RBP9.26□□□□□ -0.93
VPS13C-206ENST00000558338 COG3Q96JB2 828 aa9.26□□□□□ -0.93
VPS13C-206ENST00000558338 CHMP4BQ9H444 224 aaKnown RBP9.26□□□□□ -0.93
VPS13C-206ENST00000558338 POLKQ9UBT6 870 aa9.26□□□□□ -0.93
VPS13C-206ENST00000558338 BRPF1P55201 1214 aaPredicted RBP9.25□□□□□ -0.93
VPS13C-206ENST00000558338 SKAP1Q86WV1 359 aa9.25□□□□□ -0.93
VPS13C-206ENST00000558338 PRKAR2BP31323 418 aa9.25□□□□□ -0.93
VPS13C-206ENST00000558338 NFE2L2Q16236 605 aa9.25□□□□□ -0.93
VPS13C-206ENST00000558338 ATF7IPQ6VMQ6 1270 aa9.25□□□□□ -0.93
VPS13C-206ENST00000558338 ADAMTS13Q76LX8 1427 aa9.25□□□□□ -0.93
VPS13C-206ENST00000558338 TSR2Q969E8 191 aaKnown RBP9.25□□□□□ -0.93
VPS13C-206ENST00000558338 BCL2L13Q9BXK5 485 aa9.25□□□□□ -0.93
VPS13C-206ENST00000558338 NALCNQ8IZF0 1738 aa9.24□□□□□ -0.93
VPS13C-206ENST00000558338 RLBP1P12271 317 aa9.24□□□□□ -0.93
VPS13C-206ENST00000558338 TXNDC2Q86VQ3 553 aa9.24□□□□□ -0.93
VPS13C-206ENST00000558338 RIMS1Q86UR5 1692 aaKnown RBP9.24□□□□□ -0.93
VPS13C-206ENST00000558338 SLIT1O75093 1534 aa9.24□□□□□ -0.93
VPS13C-206ENST00000558338 UPF2Q9HAU5 1272 aaKnown RBP9.23□□□□□ -0.93
VPS13C-206ENST00000558338 ECM2O94769 699 aaPredicted RBP9.23□□□□□ -0.93
VPS13C-206ENST00000558338 IL13P35225 146 aa9.23□□□□□ -0.93
VPS13C-206ENST00000558338 GNAI1P63096 354 aa9.23□□□□□ -0.93
VPS13C-206ENST00000558338 HDAC1Q13547 482 aaPredicted RBP9.23□□□□□ -0.93
VPS13C-206ENST00000558338 SSH1Q8WYL5 1049 aa9.23□□□□□ -0.93
VPS13C-206ENST00000558338 IFT57Q9NWB7 429 aa9.23□□□□□ -0.93
VPS13C-206ENST00000558338 PCDHB15Q9Y5E8 787 aa9.23□□□□□ -0.93
VPS13C-206ENST00000558338 PTCH1Q13635 1447 aa9.22□□□□□ -0.93
VPS13C-206ENST00000558338 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.22□□□□□ -0.93
VPS13C-206ENST00000558338 ARHGAP23Q9P227 1491 aa9.22□□□□□ -0.93
VPS13C-206ENST00000558338 TRIM27P14373 513 aa9.22□□□□□ -0.93
VPS13C-206ENST00000558338 NME9Q86XW9 330 aa9.22□□□□□ -0.93
VPS13C-206ENST00000558338 ROBO2Q9HCK4 1378 aa9.22□□□□□ -0.93
VPS13C-206ENST00000558338 FER1L4A9Z1Z3 1794 aa9.22□□□□□ -0.93
VPS13C-206ENST00000558338 ITPRIPQ8IWB1 547 aa9.21□□□□□ -0.93
VPS13C-206ENST00000558338 PDZRN3Q9UPQ7 1066 aa9.21□□□□□ -0.93
VPS13C-206ENST00000558338 EID1Q9Y6B2 187 aa9.21□□□□□ -0.93
VPS13C-206ENST00000558338 OVOS2A0A0J9YW53 1432 aa9.21□□□□□ -0.93
VPS13C-206ENST00000558338 OVOS2Q6IE36 1432 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms