RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 LMOD3Q0VAK6 560 aa20.27■□□□□ 0.84
SHMT2-231ENST00000557433 SAFB2Q14151 953 aaKnown RBP eCLIP20.27■□□□□ 0.84
SHMT2-231ENST00000557433 DLC1Q96QB1 1528 aa20.27■□□□□ 0.84
SHMT2-231ENST00000557433 PANK2Q9BZ23 570 aa20.27■□□□□ 0.84
SHMT2-231ENST00000557433 ANKRD45Q5TZF3 282 aa20.26■□□□□ 0.83
SHMT2-231ENST00000557433 KIF2CQ99661 725 aa20.26■□□□□ 0.83
SHMT2-231ENST00000557433 STK26Q9P289 416 aa20.26■□□□□ 0.83
SHMT2-231ENST00000557433 MINK1Q8N4C8 1332 aaPredicted RBP20.25■□□□□ 0.83
SHMT2-231ENST00000557433 GOLGA6L22H0YM25 854 aa20.25■□□□□ 0.83
SHMT2-231ENST00000557433 PRKAR2BP31323 418 aa20.25■□□□□ 0.83
SHMT2-231ENST00000557433 NUTM2DQ5VT03 806 aaPredicted RBP20.25■□□□□ 0.83
SHMT2-231ENST00000557433 API5Q9BZZ5 524 aaKnown RBP20.25■□□□□ 0.83
SHMT2-231ENST00000557433 IBTKQ9P2D0 1353 aaPredicted RBP20.25■□□□□ 0.83
SHMT2-231ENST00000557433 CDC45O75419 566 aa20.25■□□□□ 0.83
SHMT2-231ENST00000557433 PREX1Q8TCU6 1659 aa20.25■□□□□ 0.83
SHMT2-231ENST00000557433 HSP90AA1P07900 732 aaKnown RBP20.24■□□□□ 0.83
SHMT2-231ENST00000557433 ZNF853P0CG23 659 aa20.23■□□□□ 0.83
SHMT2-231ENST00000557433 TBC1D9Q6ZT07 1266 aa20.23■□□□□ 0.83
SHMT2-231ENST00000557433 CDK19Q9BWU1 502 aa20.23■□□□□ 0.83
SHMT2-231ENST00000557433 ALKQ9UM73 1620 aa20.23■□□□□ 0.83
SHMT2-231ENST00000557433 POLKQ9UBT6 870 aa20.22■□□□□ 0.83
SHMT2-231ENST00000557433 YEATS2Q9ULM3 1422 aa20.22■□□□□ 0.83
SHMT2-231ENST00000557433 CDK12Q9NYV4 1490 aaPredicted RBP20.22■□□□□ 0.83
SHMT2-231ENST00000557433 HAP1P54257 671 aaPredicted RBP20.21■□□□□ 0.83
SHMT2-231ENST00000557433 AATKQ6ZMQ8 1374 aa20.21■□□□□ 0.83
SHMT2-231ENST00000557433 ESPNB1AK53 854 aa20.2■□□□□ 0.82
SHMT2-231ENST00000557433 RABEP1Q15276 862 aa20.2■□□□□ 0.82
SHMT2-231ENST00000557433 TRIM44Q96DX7 344 aaPredicted RBP20.2■□□□□ 0.82
SHMT2-231ENST00000557433 CABP1Q9NZU7 370 aa20.2■□□□□ 0.82
SHMT2-231ENST00000557433 MYO5BQ9ULV0 1848 aa20.2■□□□□ 0.82
SHMT2-231ENST00000557433 ARXQ96QS3 562 aa20.19■□□□□ 0.82
SHMT2-231ENST00000557433 EDC4Q6P2E9 1401 aaKnown RBP20.18■□□□□ 0.82
SHMT2-231ENST00000557433 RICTORQ6R327 1708 aa20.17■□□□□ 0.82
SHMT2-231ENST00000557433 KLHL40Q2TBA0 621 aa20.17■□□□□ 0.82
SHMT2-231ENST00000557433 SIRT2Q8IXJ6 389 aa20.17■□□□□ 0.82
SHMT2-231ENST00000557433 CPSF1Q10570 1443 aaKnown RBP20.17■□□□□ 0.82
SHMT2-231ENST00000557433 NUCB2P80303 420 aa20.16■□□□□ 0.82
SHMT2-231ENST00000557433 CCDC173Q0VFZ6 552 aa20.16■□□□□ 0.82
SHMT2-231ENST00000557433 TWISTNBQ3B726 338 aaPredicted RBP20.16■□□□□ 0.82
SHMT2-231ENST00000557433 NAP1L5Q96NT1 182 aaPredicted RBP20.16■□□□□ 0.82
SHMT2-231ENST00000557433 IL13P35225 146 aa20.15■□□□□ 0.82
SHMT2-231ENST00000557433 DCTPP1Q9H773 170 aa20.15■□□□□ 0.82
SHMT2-231ENST00000557433 MBIPQ9NS73 344 aa20.15■□□□□ 0.82
SHMT2-231ENST00000557433 ANP32BQ92688 251 aaKnown RBP20.14■□□□□ 0.81
SHMT2-231ENST00000557433 PHACTR3Q96KR7 559 aa20.14■□□□□ 0.81
SHMT2-231ENST00000557433 PPP1R9BQ96SB3 815 aa20.14■□□□□ 0.81
SHMT2-231ENST00000557433 MAP2P11137 1827 aaKnown RBP20.13■□□□□ 0.81
SHMT2-231ENST00000557433 RAPGEF3O95398 923 aa20.13■□□□□ 0.81
SHMT2-231ENST00000557433 CWC22Q9HCG8 908 aaKnown RBP20.13■□□□□ 0.81
SHMT2-231ENST00000557433 INTS3Q68E01 1043 aaKnown RBP20.12■□□□□ 0.81
SHMT2-231ENST00000557433 PLEKHM2Q8IWE5 1019 aa20.12■□□□□ 0.81
SHMT2-231ENST00000557433 RPAP2Q8IXW5 612 aaPredicted RBP20.12■□□□□ 0.81
SHMT2-231ENST00000557433 TSPYL6Q8N831 410 aa20.12■□□□□ 0.81
SHMT2-231ENST00000557433 RIMS2Q9UQ26 1411 aa20.12■□□□□ 0.81
SHMT2-231ENST00000557433 CD2BP2O95400 341 aaKnown RBP20.12■□□□□ 0.81
SHMT2-231ENST00000557433 GLIPR1L2Q4G1C9 344 aa20.12■□□□□ 0.81
SHMT2-231ENST00000557433 TTC22Q5TAA0 569 aa20.12■□□□□ 0.81
SHMT2-231ENST00000557433 CASC1Q6TDU7 716 aa20.12■□□□□ 0.81
SHMT2-231ENST00000557433 GAS2L3Q86XJ1 694 aa20.12■□□□□ 0.81
SHMT2-231ENST00000557433 GAS2L2Q8NHY3 880 aa20.12■□□□□ 0.81
SHMT2-231ENST00000557433 C1orf115Q9H7X2 142 aa20.12■□□□□ 0.81
SHMT2-231ENST00000557433 BAG4O95429 457 aaKnown RBP20.11■□□□□ 0.81
SHMT2-231ENST00000557433 PPP6R1Q9UPN7 881 aa20.11■□□□□ 0.81
SHMT2-231ENST00000557433 RRP9O43818 475 aaKnown RBP20.1■□□□□ 0.81
SHMT2-231ENST00000557433 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.1■□□□□ 0.81
SHMT2-231ENST00000557433 ANKRD44Q8N8A2 993 aa20.1■□□□□ 0.81
SHMT2-231ENST00000557433 HMOX1P09601 288 aa20.09■□□□□ 0.81
SHMT2-231ENST00000557433 GSPT1P15170 499 aaKnown RBP20.09■□□□□ 0.81
SHMT2-231ENST00000557433 SSFA2P28290 1259 aa20.09■□□□□ 0.81
SHMT2-231ENST00000557433 ZNF445P59923 1031 aa20.09■□□□□ 0.81
SHMT2-231ENST00000557433 TPM2P07951 284 aa20.08■□□□□ 0.8
SHMT2-231ENST00000557433 NASPP49321 788 aaPredicted RBP20.08■□□□□ 0.8
SHMT2-231ENST00000557433 USP26Q9BXU7 913 aa20.08■□□□□ 0.8
SHMT2-231ENST00000557433 DDX49Q9Y6V7 483 aaKnown RBP20.08■□□□□ 0.8
SHMT2-231ENST00000557433 CYP2E1P05181 493 aaPredicted RBP20.07■□□□□ 0.8
SHMT2-231ENST00000557433 HS1BP3Q53T59 392 aa20.07■□□□□ 0.8
SHMT2-231ENST00000557433 C8orf58Q8NAV2 365 aa20.07■□□□□ 0.8
SHMT2-231ENST00000557433 THUMPD2Q9BTF0 503 aaKnown RBP20.07■□□□□ 0.8
SHMT2-231ENST00000557433 KIAA0232Q92628 1395 aa20.06■□□□□ 0.8
SHMT2-231ENST00000557433 PTPRCP08575 1304 aa20.06■□□□□ 0.8
SHMT2-231ENST00000557433 KNDC1Q76NI1 1749 aa20.06■□□□□ 0.8
SHMT2-231ENST00000557433 DLG5Q8TDM6 1919 aa20.06■□□□□ 0.8
SHMT2-231ENST00000557433 ST18O60284 1047 aa20.06■□□□□ 0.8
SHMT2-231ENST00000557433 RBM42Q9BTD8 480 aaKnown RBP20.06■□□□□ 0.8
SHMT2-231ENST00000557433 RIMBP3CA6NJZ7 1639 aa20.05■□□□□ 0.8
SHMT2-231ENST00000557433 RIMBP3BA6NNM3 1639 aa20.05■□□□□ 0.8
SHMT2-231ENST00000557433 RIMBP3Q9UFD9 1639 aa20.05■□□□□ 0.8
SHMT2-231ENST00000557433 SETD1AO15047 1707 aaKnown RBP20.05■□□□□ 0.8
SHMT2-231ENST00000557433 REC8O95072 547 aa20.05■□□□□ 0.8
SHMT2-231ENST00000557433 EMILIN1Q9Y6C2 1016 aa20.05■□□□□ 0.8
SHMT2-231ENST00000557433 ATP10DQ9P241 1426 aa20.05■□□□□ 0.8
SHMT2-231ENST00000557433 ERBB4Q15303 1308 aa20.04■□□□□ 0.8
SHMT2-231ENST00000557433 NRKQ7Z2Y5 1582 aa20.04■□□□□ 0.8
SHMT2-231ENST00000557433 SIRT1Q96EB6 747 aa20.04■□□□□ 0.8
SHMT2-231ENST00000557433 COG3Q96JB2 828 aa20.04■□□□□ 0.8
SHMT2-231ENST00000557433 STAG3Q9UJ98 1225 aa20.04■□□□□ 0.8
SHMT2-231ENST00000557433 MON2Q7Z3U7 1717 aa20.04■□□□□ 0.8
SHMT2-231ENST00000557433 ZSCAN30Q86W11 494 aa20.04■□□□□ 0.8
SHMT2-231ENST00000557433 WASLO00401 505 aaPredicted RBP20.03■□□□□ 0.8
SHMT2-231ENST00000557433 FOXD4L1Q9NU39 408 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms