RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 RRS1Q15050 365 aaKnown RBP19.25■□□□□ 0.67
VPS33B-205ENST00000556096 NEUROD2Q15784 382 aa19.25■□□□□ 0.67
VPS33B-205ENST00000556096 MAPK8IP3Q9UPT6 1336 aa19.25■□□□□ 0.67
VPS33B-205ENST00000556096 NHSL1Q5SYE7 1610 aa19.24■□□□□ 0.67
VPS33B-205ENST00000556096 TMPOP42166 694 aaKnown RBP19.24■□□□□ 0.67
VPS33B-205ENST00000556096 RSPH6AQ9H0K4 717 aa19.23■□□□□ 0.67
VPS33B-205ENST00000556096 USP54Q70EL1 1684 aa19.23■□□□□ 0.67
VPS33B-205ENST00000556096 PSME1Q06323 249 aa19.22■□□□□ 0.67
VPS33B-205ENST00000556096 PLEKHG5O94827 1062 aa19.22■□□□□ 0.67
VPS33B-205ENST00000556096 KRT28Q7Z3Y7 464 aa19.22■□□□□ 0.67
VPS33B-205ENST00000556096 AHDC1Q5TGY3 1603 aaPredicted RBP19.21■□□□□ 0.67
VPS33B-205ENST00000556096 NPHP3Q7Z494 1330 aa19.2■□□□□ 0.66
VPS33B-205ENST00000556096 PXDNQ92626 1479 aa19.2■□□□□ 0.66
VPS33B-205ENST00000556096 COL16A1Q07092 1604 aaPredicted RBP19.2■□□□□ 0.66
VPS33B-205ENST00000556096 PAK3O75914 559 aaPredicted RBP19.2■□□□□ 0.66
VPS33B-205ENST00000556096 NEFMP07197 916 aa19.2■□□□□ 0.66
VPS33B-205ENST00000556096 PRKAR2BP31323 418 aa19.19■□□□□ 0.66
VPS33B-205ENST00000556096 ALS2Q96Q42 1657 aa19.19■□□□□ 0.66
VPS33B-205ENST00000556096 LMOD2Q6P5Q4 547 aa19.18■□□□□ 0.66
VPS33B-205ENST00000556096 TRIM35Q9UPQ4 493 aa19.18■□□□□ 0.66
VPS33B-205ENST00000556096 IL16Q14005 1332 aa19.18■□□□□ 0.66
VPS33B-205ENST00000556096 NLRP6P59044 892 aa19.17■□□□□ 0.66
VPS33B-205ENST00000556096 MYH16Q9H6N6 1097 aa19.17■□□□□ 0.66
VPS33B-205ENST00000556096 SOS2Q07890 1332 aaPredicted RBP19.17■□□□□ 0.66
VPS33B-205ENST00000556096 RIPK4P57078 832 aa19.17■□□□□ 0.66
VPS33B-205ENST00000556096 PEAK1Q9H792 1746 aa19.16■□□□□ 0.66
VPS33B-205ENST00000556096 EIF4A2Q14240 407 aaKnown RBP19.16■□□□□ 0.66
VPS33B-205ENST00000556096 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.16■□□□□ 0.66
VPS33B-205ENST00000556096 SBNO1A3KN83 1393 aa19.16■□□□□ 0.66
VPS33B-205ENST00000556096 KIF24Q5T7B8 1368 aa19.16■□□□□ 0.66
VPS33B-205ENST00000556096 MAP3K19Q56UN5 1328 aa19.15■□□□□ 0.66
VPS33B-205ENST00000556096 HMOX1P09601 288 aa19.15■□□□□ 0.66
VPS33B-205ENST00000556096 NUTM2GQ5VZR2 741 aa19.15■□□□□ 0.66
VPS33B-205ENST00000556096 ABTB2Q8N961 1025 aa19.15■□□□□ 0.66
VPS33B-205ENST00000556096 NFE2L2Q16236 605 aa19.14■□□□□ 0.66
VPS33B-205ENST00000556096 FLT4P35916 1363 aa19.14■□□□□ 0.65
VPS33B-205ENST00000556096 PLIN1O60240 522 aa19.13■□□□□ 0.65
VPS33B-205ENST00000556096 HSP90AB2PQ58FF8 381 aa19.13■□□□□ 0.65
VPS33B-205ENST00000556096 B4GALNT3Q6L9W6 998 aa19.13■□□□□ 0.65
VPS33B-205ENST00000556096 PHACTR3Q96KR7 559 aa19.12■□□□□ 0.65
VPS33B-205ENST00000556096 EXOC6Q8TAG9 804 aa19.11■□□□□ 0.65
VPS33B-205ENST00000556096 LRRC59Q96AG4 307 aaKnown RBP19.11■□□□□ 0.65
VPS33B-205ENST00000556096 SPATA31A3Q5VYP0 1347 aa19.11■□□□□ 0.65
VPS33B-205ENST00000556096 RGPD1P0DJD0 1748 aa19.11■□□□□ 0.65
VPS33B-205ENST00000556096 CT47B1P0C2W7 299 aaPredicted RBP19.11■□□□□ 0.65
VPS33B-205ENST00000556096 SOX12O15370 315 aa19.1■□□□□ 0.65
VPS33B-205ENST00000556096 AMPHP49418 695 aa19.1■□□□□ 0.65
VPS33B-205ENST00000556096 TNS3Q68CZ2 1445 aa19.1■□□□□ 0.65
VPS33B-205ENST00000556096 LTN1O94822 1766 aa19.1■□□□□ 0.65
VPS33B-205ENST00000556096 CABLES1Q8TDN4 633 aa19.09■□□□□ 0.65
VPS33B-205ENST00000556096 CCDC136Q96JN2 1154 aa19.09■□□□□ 0.65
VPS33B-205ENST00000556096 ARHGEF10O15013 1369 aa19.09■□□□□ 0.65
VPS33B-205ENST00000556096 CRYBG1Q9Y4K1 1723 aa19.08■□□□□ 0.64
VPS33B-205ENST00000556096 NUTM2BA6NNL0 878 aaPredicted RBP19.08■□□□□ 0.64
VPS33B-205ENST00000556096 NUTM2EB1AL46 878 aaPredicted RBP19.08■□□□□ 0.64
VPS33B-205ENST00000556096 CALD1Q05682 793 aaKnown RBP19.08■□□□□ 0.64
VPS33B-205ENST00000556096 LMOD3Q0VAK6 560 aa19.08■□□□□ 0.64
VPS33B-205ENST00000556096 SULT6B1Q6IMI4 303 aa19.08■□□□□ 0.64
VPS33B-205ENST00000556096 NUTM2AQ8IVF1 878 aaPredicted RBP19.08■□□□□ 0.64
VPS33B-205ENST00000556096 SLIT3O75094 1523 aa19.08■□□□□ 0.64
VPS33B-205ENST00000556096 NFAT5O94916 1531 aa19.08■□□□□ 0.64
VPS33B-205ENST00000556096 PHRF1Q9P1Y6 1649 aaKnown RBP19.07■□□□□ 0.64
VPS33B-205ENST00000556096 JCADQ9P266 1359 aa19.07■□□□□ 0.64
VPS33B-205ENST00000556096 BCAR3O75815 825 aa19.07■□□□□ 0.64
VPS33B-205ENST00000556096 MED1Q15648 1581 aaPredicted RBP19.07■□□□□ 0.64
VPS33B-205ENST00000556096 FANCIQ9NVI1 1328 aa19.07■□□□□ 0.64
VPS33B-205ENST00000556096 RTL1A6NKG5 1358 aa19.07■□□□□ 0.64
VPS33B-205ENST00000556096 RARSP54136 660 aaKnown RBP19.06■□□□□ 0.64
VPS33B-205ENST00000556096 HOXC9P31274 260 aa19.05■□□□□ 0.64
VPS33B-205ENST00000556096 KCNH5Q8NCM2 988 aa19.05■□□□□ 0.64
VPS33B-205ENST00000556096 CRBNQ96SW2 442 aa19.05■□□□□ 0.64
VPS33B-205ENST00000556096 C20orf194Q5TEA3 1177 aa19.05■□□□□ 0.64
VPS33B-205ENST00000556096 AEBP1Q8IUX7 1158 aa19.04■□□□□ 0.64
VPS33B-205ENST00000556096 USP19O94966 1318 aa19.04■□□□□ 0.64
VPS33B-205ENST00000556096 KDRP35968 1356 aa19.03■□□□□ 0.64
VPS33B-205ENST00000556096 IGSF1Q8N6C5 1336 aa19.03■□□□□ 0.64
VPS33B-205ENST00000556096 PDE3AQ14432 1141 aa19.03■□□□□ 0.64
VPS33B-205ENST00000556096 TSR2Q969E8 191 aaKnown RBP19.03■□□□□ 0.64
VPS33B-205ENST00000556096 ABCA3Q99758 1704 aa19.02■□□□□ 0.64
VPS33B-205ENST00000556096 EYA1Q99502 592 aa19.02■□□□□ 0.63
VPS33B-205ENST00000556096 EXOSC9Q06265 439 aaKnown RBP19.01■□□□□ 0.63
VPS33B-205ENST00000556096 IP6K1Q92551 441 aa19.01■□□□□ 0.63
VPS33B-205ENST00000556096 DLG5Q8TDM6 1919 aa19.01■□□□□ 0.63
VPS33B-205ENST00000556096 LRP6O75581 1613 aa19■□□□□ 0.63
VPS33B-205ENST00000556096 ADAMTS2O95450 1211 aa19■□□□□ 0.63
VPS33B-205ENST00000556096 ZNF853P0CG23 659 aa19■□□□□ 0.63
VPS33B-205ENST00000556096 HAP1P54257 671 aaPredicted RBP19■□□□□ 0.63
VPS33B-205ENST00000556096 GNAI1P63096 354 aa19■□□□□ 0.63
VPS33B-205ENST00000556096 IFT57Q9NWB7 429 aa19■□□□□ 0.63
VPS33B-205ENST00000556096 COL22A1Q8NFW1 1626 aaPredicted RBP19■□□□□ 0.63
VPS33B-205ENST00000556096 GCP02774 474 aa18.99■□□□□ 0.63
VPS33B-205ENST00000556096 ZBTB7CA1YPR0 619 aa18.97■□□□□ 0.63
VPS33B-205ENST00000556096 ZNF428Q96B54 188 aa18.97■□□□□ 0.63
VPS33B-205ENST00000556096 TSHZ2Q9NRE2 1034 aa18.97■□□□□ 0.63
VPS33B-205ENST00000556096 CFAP44Q96MT7 982 aa18.97■□□□□ 0.63
VPS33B-205ENST00000556096 RGPD5Q99666 1765 aa18.96■□□□□ 0.63
VPS33B-205ENST00000556096 SPATA31A6Q5VVP1 1343 aa18.96■□□□□ 0.63
VPS33B-205ENST00000556096 CANXP27824 592 aaKnown RBP18.95■□□□□ 0.62
VPS33B-205ENST00000556096 ZC3H6P61129 1189 aaKnown RBP18.95■□□□□ 0.62
VPS33B-205ENST00000556096 ARHGEF25Q86VW2 580 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms