RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 RTL1A6NKG5 1358 aa17.47■□□□□ 0.39
PTCH1-215ENST00000547672 MAP3K19Q56UN5 1328 aa17.47■□□□□ 0.39
PTCH1-215ENST00000547672 PIK3C2AO00443 1686 aa17.46■□□□□ 0.39
PTCH1-215ENST00000547672 FOXO3O43524 673 aa17.46■□□□□ 0.39
PTCH1-215ENST00000547672 EIF4A2Q14240 407 aaKnown RBP17.46■□□□□ 0.39
PTCH1-215ENST00000547672 RRP7AQ9Y3A4 280 aaKnown RBP17.46■□□□□ 0.39
PTCH1-215ENST00000547672 ORAI2Q96SN7 254 aa17.45■□□□□ 0.38
PTCH1-215ENST00000547672 NPHP3Q7Z494 1330 aa17.45■□□□□ 0.38
PTCH1-215ENST00000547672 ARHGEF10O15013 1369 aa17.44■□□□□ 0.38
PTCH1-215ENST00000547672 STRCQ7RTU9 1775 aa17.44■□□□□ 0.38
PTCH1-215ENST00000547672 HMOX1P09601 288 aa17.43■□□□□ 0.38
PTCH1-215ENST00000547672 MST1RQ04912 1400 aa17.43■□□□□ 0.38
PTCH1-215ENST00000547672 HSP90AB2PQ58FF8 381 aa17.42■□□□□ 0.38
PTCH1-215ENST00000547672 SULT6B1Q6IMI4 303 aa17.42■□□□□ 0.38
PTCH1-215ENST00000547672 IP6K1Q92551 441 aa17.42■□□□□ 0.38
PTCH1-215ENST00000547672 SOX12O15370 315 aa17.41■□□□□ 0.38
PTCH1-215ENST00000547672 HOXC9P31274 260 aa17.41■□□□□ 0.38
PTCH1-215ENST00000547672 IRX6P78412 446 aaPredicted RBP17.41■□□□□ 0.38
PTCH1-215ENST00000547672 ZNF428Q96B54 188 aa17.41■□□□□ 0.38
PTCH1-215ENST00000547672 TRIM35Q9UPQ4 493 aa17.41■□□□□ 0.38
PTCH1-215ENST00000547672 MS4A1P11836 297 aa17.4■□□□□ 0.38
PTCH1-215ENST00000547672 HAP1P54257 671 aaPredicted RBP17.4■□□□□ 0.38
PTCH1-215ENST00000547672 GNAI1P63096 354 aa17.4■□□□□ 0.38
PTCH1-215ENST00000547672 STRCP1A6NGW2 1772 aa17.39■□□□□ 0.37
PTCH1-215ENST00000547672 NUTM2GQ5VZR2 741 aa17.39■□□□□ 0.37
PTCH1-215ENST00000547672 HTATSF1O43719 755 aaKnown RBP17.38■□□□□ 0.37
PTCH1-215ENST00000547672 GCP02774 474 aa17.38■□□□□ 0.37
PTCH1-215ENST00000547672 LMOD2Q6P5Q4 547 aa17.38■□□□□ 0.37
PTCH1-215ENST00000547672 SPINK5Q9NQ38 1064 aaPredicted RBP17.38■□□□□ 0.37
PTCH1-215ENST00000547672 AAMPQ13685 434 aa17.37■□□□□ 0.37
PTCH1-215ENST00000547672 GAS2L2Q8NHY3 880 aa17.37■□□□□ 0.37
PTCH1-215ENST00000547672 FBXO41Q8TF61 875 aa17.37■□□□□ 0.37
PTCH1-215ENST00000547672 PHACTR3Q96KR7 559 aa17.37■□□□□ 0.37
PTCH1-215ENST00000547672 IFT57Q9NWB7 429 aa17.37■□□□□ 0.37
PTCH1-215ENST00000547672 USP19O94966 1318 aa17.37■□□□□ 0.37
PTCH1-215ENST00000547672 IGSF1Q8N6C5 1336 aa17.37■□□□□ 0.37
PTCH1-215ENST00000547672 PDE3AQ14432 1141 aa17.36■□□□□ 0.37
PTCH1-215ENST00000547672 CCDC136Q96JN2 1154 aa17.36■□□□□ 0.37
PTCH1-215ENST00000547672 SLAIN2Q9P270 581 aa17.36■□□□□ 0.37
PTCH1-215ENST00000547672 KDRP35968 1356 aa17.36■□□□□ 0.37
PTCH1-215ENST00000547672 PEAK1Q9H792 1746 aa17.35■□□□□ 0.37
PTCH1-215ENST00000547672 RTF1Q92541 710 aaKnown RBP17.35■□□□□ 0.37
PTCH1-215ENST00000547672 SLIT3O75094 1523 aa17.34■□□□□ 0.37
PTCH1-215ENST00000547672 CANXP27824 592 aaKnown RBP17.34■□□□□ 0.37
PTCH1-215ENST00000547672 ARHGEF25Q86VW2 580 aa17.34■□□□□ 0.37
PTCH1-215ENST00000547672 EYA1Q99502 592 aa17.34■□□□□ 0.37
PTCH1-215ENST00000547672 PHRF1Q9P1Y6 1649 aaKnown RBP17.34■□□□□ 0.37
PTCH1-215ENST00000547672 RGPD1P0DJD0 1748 aa17.33■□□□□ 0.37
PTCH1-215ENST00000547672 TRPM3Q9HCF6 1732 aaPredicted RBP17.33■□□□□ 0.37
PTCH1-215ENST00000547672 MARF1Q9Y4F3 1742 aaKnown RBP17.33■□□□□ 0.37
PTCH1-215ENST00000547672 CFAP44Q96MT7 982 aa17.33■□□□□ 0.36
PTCH1-215ENST00000547672 NFAT5O94916 1531 aa17.32■□□□□ 0.36
PTCH1-215ENST00000547672 ZNF335Q9H4Z2 1342 aaPredicted RBP17.32■□□□□ 0.36
PTCH1-215ENST00000547672 FANCIQ9NVI1 1328 aa17.32■□□□□ 0.36
PTCH1-215ENST00000547672 RARSP54136 660 aaKnown RBP17.32■□□□□ 0.36
PTCH1-215ENST00000547672 IPO8O15397 1037 aaKnown RBP17.31■□□□□ 0.36
PTCH1-215ENST00000547672 SPATA31A3Q5VYP0 1347 aa17.3■□□□□ 0.36
PTCH1-215ENST00000547672 XPCQ01831 940 aaPredicted RBP17.3■□□□□ 0.36
PTCH1-215ENST00000547672 ALDH1L2Q3SY69 923 aa17.3■□□□□ 0.36
PTCH1-215ENST00000547672 LTN1O94822 1766 aa17.3■□□□□ 0.36
PTCH1-215ENST00000547672 TNS3Q68CZ2 1445 aa17.3■□□□□ 0.36
PTCH1-215ENST00000547672 ZNF853P0CG23 659 aa17.29■□□□□ 0.36
PTCH1-215ENST00000547672 EXOSC9Q06265 439 aaKnown RBP17.29■□□□□ 0.36
PTCH1-215ENST00000547672 BRINP3Q76B58 766 aa17.29■□□□□ 0.36
PTCH1-215ENST00000547672 AEBP1Q8IUX7 1158 aa17.29■□□□□ 0.36
PTCH1-215ENST00000547672 AMOTQ4VCS5 1084 aa17.28■□□□□ 0.36
PTCH1-215ENST00000547672 CHMP4AQ9BY43 222 aa17.28■□□□□ 0.36
PTCH1-215ENST00000547672 BABAM1Q9NWV8 329 aa17.28■□□□□ 0.36
PTCH1-215ENST00000547672 LAS1LQ9Y4W2 734 aaKnown RBP17.28■□□□□ 0.36
PTCH1-215ENST00000547672 ALS2Q96Q42 1657 aa17.28■□□□□ 0.36
PTCH1-215ENST00000547672 XIRP1Q702N8 1843 aaKnown RBP17.28■□□□□ 0.36
PTCH1-215ENST00000547672 PLIN1O60240 522 aa17.27■□□□□ 0.36
PTCH1-215ENST00000547672 EXOC6Q8TAG9 804 aa17.27■□□□□ 0.36
PTCH1-215ENST00000547672 LTV1Q96GA3 475 aaPredicted RBP17.27■□□□□ 0.36
PTCH1-215ENST00000547672 ABCC6O95255 1503 aa17.26■□□□□ 0.35
PTCH1-215ENST00000547672 GNAT3A8MTJ3 354 aa17.26■□□□□ 0.35
PTCH1-215ENST00000547672 BCAR3O75815 825 aa17.26■□□□□ 0.35
PTCH1-215ENST00000547672 PLEKHO1Q53GL0 409 aaPredicted RBP17.26■□□□□ 0.35
PTCH1-215ENST00000547672 TSR2Q969E8 191 aaKnown RBP17.26■□□□□ 0.35
PTCH1-215ENST00000547672 KIF16BQ96L93 1317 aa17.25■□□□□ 0.35
PTCH1-215ENST00000547672 ZBTB7CA1YPR0 619 aa17.25■□□□□ 0.35
PTCH1-215ENST00000547672 BRPF1P55201 1214 aaPredicted RBP17.25■□□□□ 0.35
PTCH1-215ENST00000547672 ZKSCAN2Q63HK3 967 aa17.25■□□□□ 0.35
PTCH1-215ENST00000547672 B4GALNT3Q6L9W6 998 aa17.25■□□□□ 0.35
PTCH1-215ENST00000547672 CHMP4BQ9H444 224 aaKnown RBP17.25■□□□□ 0.35
PTCH1-215ENST00000547672 PLEKHG2Q9H7P9 1386 aa17.25■□□□□ 0.35
PTCH1-215ENST00000547672 PXDNQ92626 1479 aa17.24■□□□□ 0.35
PTCH1-215ENST00000547672 SOS2Q07890 1332 aaPredicted RBP17.24■□□□□ 0.35
PTCH1-215ENST00000547672 DLG5Q8TDM6 1919 aa17.24■□□□□ 0.35
PTCH1-215ENST00000547672 MTHFSDQ2M296 383 aaKnown RBP17.24■□□□□ 0.35
PTCH1-215ENST00000547672 ANKRD24Q8TF21 1146 aa17.24■□□□□ 0.35
PTCH1-215ENST00000547672 CRBNQ96SW2 442 aa17.24■□□□□ 0.35
PTCH1-215ENST00000547672 SMC4Q9NTJ3 1288 aa17.24■□□□□ 0.35
PTCH1-215ENST00000547672 SOS1Q07889 1333 aaPredicted RBP17.23■□□□□ 0.35
PTCH1-215ENST00000547672 CHL1O00533 1208 aa17.23■□□□□ 0.35
PTCH1-215ENST00000547672 FRAT1Q92837 279 aaPredicted RBP17.23■□□□□ 0.35
PTCH1-215ENST00000547672 MBIPQ9NS73 344 aa17.22■□□□□ 0.35
PTCH1-215ENST00000547672 CPDO75976 1380 aa17.22■□□□□ 0.35
PTCH1-215ENST00000547672 KIAA0232Q92628 1395 aa17.22■□□□□ 0.35
PTCH1-215ENST00000547672 NBPF6Q5VWK0 638 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms