RNA–Protein interactions for RNA: ENST00000546080.5

SRP54-202, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 2,187 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-202ENST00000546080 PIK3R4Q99570 1358 aa17.56■□□□□ 0.4
SRP54-202ENST00000546080 NCLP19338 710 aaKnown RBP17.56■□□□□ 0.4
SRP54-202ENST00000546080 SRPK2P78362 688 aaKnown RBP17.56■□□□□ 0.4
SRP54-202ENST00000546080 CAVIN1Q6NZI2 390 aaKnown RBP17.56■□□□□ 0.4
SRP54-202ENST00000546080 ARHGAP45Q92619 1136 aa17.56■□□□□ 0.4
SRP54-202ENST00000546080 CFAP44Q96MT7 982 aa17.56■□□□□ 0.4
SRP54-202ENST00000546080 CAMSAP1Q5T5Y3 1602 aa17.55■□□□□ 0.4
SRP54-202ENST00000546080 MRPL50Q8N5N7 158 aaKnown RBP17.55■□□□□ 0.4
SRP54-202ENST00000546080 HS1BP3Q53T59 392 aa17.55■□□□□ 0.4
SRP54-202ENST00000546080 LRRC7Q96NW7 1537 aa17.54■□□□□ 0.4
SRP54-202ENST00000546080 FYB1O15117 783 aa17.54■□□□□ 0.4
SRP54-202ENST00000546080 TERF1P54274 439 aa17.54■□□□□ 0.4
SRP54-202ENST00000546080 ZSCAN23Q3MJ62 389 aa17.54■□□□□ 0.4
SRP54-202ENST00000546080 NUTM2DQ5VT03 806 aaPredicted RBP17.54■□□□□ 0.4
SRP54-202ENST00000546080 SIRT2Q8IXJ6 389 aa17.54■□□□□ 0.4
SRP54-202ENST00000546080 CFAP65Q6ZU64 1925 aaKnown RBP17.53■□□□□ 0.4
SRP54-202ENST00000546080 GSPT1P15170 499 aaKnown RBP17.53■□□□□ 0.4
SRP54-202ENST00000546080 TERF2IPQ9NYB0 399 aa17.53■□□□□ 0.4
SRP54-202ENST00000546080 VGFO15240 615 aaPredicted RBP17.53■□□□□ 0.4
SRP54-202ENST00000546080 FCHSD2O94868 740 aa17.53■□□□□ 0.4
SRP54-202ENST00000546080 CYB5RLQ6IPT4 315 aa17.53■□□□□ 0.4
SRP54-202ENST00000546080 VAMP4O75379 141 aa17.52■□□□□ 0.4
SRP54-202ENST00000546080 LMBRD1Q9NUN5 540 aa17.52■□□□□ 0.4
SRP54-202ENST00000546080 ABCC4O15439 1325 aa17.52■□□□□ 0.4
SRP54-202ENST00000546080 PNPLA6Q8IY17 1366 aa17.52■□□□□ 0.4
SRP54-202ENST00000546080 ATAD2Q6PL18 1390 aa17.51■□□□□ 0.39
SRP54-202ENST00000546080 CYP2E1P05181 493 aaPredicted RBP17.51■□□□□ 0.39
SRP54-202ENST00000546080 PRKAR2BP31323 418 aa17.51■□□□□ 0.39
SRP54-202ENST00000546080 ZFYVE9O95405 1425 aa17.51■□□□□ 0.39
SRP54-202ENST00000546080 FAM135BQ49AJ0 1406 aa17.51■□□□□ 0.39
SRP54-202ENST00000546080 CDC42BPGQ6DT37 1551 aa17.51■□□□□ 0.39
SRP54-202ENST00000546080 GGT6Q6P531 493 aa17.5■□□□□ 0.39
SRP54-202ENST00000546080 AK9Q5TCS8 1911 aa17.5■□□□□ 0.39
SRP54-202ENST00000546080 RBSNQ9H1K0 784 aa17.5■□□□□ 0.39
SRP54-202ENST00000546080 NOL7Q9UMY1 257 aaKnown RBP17.5■□□□□ 0.39
SRP54-202ENST00000546080 R3HCC1Q9Y3T6 440 aaKnown RBP17.5■□□□□ 0.39
SRP54-202ENST00000546080 NEXMIFQ5QGS0 1516 aa17.5■□□□□ 0.39
SRP54-202ENST00000546080 PLEKHM2Q8IWE5 1019 aa17.49■□□□□ 0.39
SRP54-202ENST00000546080 CWC22Q9HCG8 908 aaKnown RBP17.49■□□□□ 0.39
SRP54-202ENST00000546080 HECW2Q9P2P5 1572 aa17.49■□□□□ 0.39
SRP54-202ENST00000546080 ZNF500O60304 480 aaPredicted RBP17.49■□□□□ 0.39
SRP54-202ENST00000546080 TSPYL6Q8N831 410 aa17.49■□□□□ 0.39
SRP54-202ENST00000546080 STK26Q9P289 416 aa17.49■□□□□ 0.39
SRP54-202ENST00000546080 TTC22Q5TAA0 569 aa17.48■□□□□ 0.39
SRP54-202ENST00000546080 INTS3Q68E01 1043 aaKnown RBP17.48■□□□□ 0.39
SRP54-202ENST00000546080 PDLIM2Q96JY6 352 aa17.48■□□□□ 0.39
SRP54-202ENST00000546080 GNAI1P63096 354 aa17.47■□□□□ 0.39
SRP54-202ENST00000546080 RBM10P98175 930 aaKnown RBP17.47■□□□□ 0.39
SRP54-202ENST00000546080 NFE2L2Q16236 605 aa17.47■□□□□ 0.39
SRP54-202ENST00000546080 USP26Q9BXU7 913 aa17.47■□□□□ 0.39
SRP54-202ENST00000546080 CD163L1Q9NR16 1453 aa17.47■□□□□ 0.39
SRP54-202ENST00000546080 ELL2O00472 640 aaPredicted RBP17.47■□□□□ 0.39
SRP54-202ENST00000546080 ST18O60284 1047 aa17.47■□□□□ 0.39
SRP54-202ENST00000546080 PRIM1P49642 420 aaKnown RBP17.47■□□□□ 0.39
SRP54-202ENST00000546080 PKP1Q13835 747 aa17.47■□□□□ 0.39
SRP54-202ENST00000546080 HDGFL2Q7Z4V5 671 aaPredicted RBP17.47■□□□□ 0.39
SRP54-202ENST00000546080 THUMPD2Q9BTF0 503 aaKnown RBP17.47■□□□□ 0.39
SRP54-202ENST00000546080 API5Q9BZZ5 524 aaKnown RBP17.47■□□□□ 0.39
SRP54-202ENST00000546080 PRPF40AO75400 957 aaKnown RBP17.46■□□□□ 0.39
SRP54-202ENST00000546080 MAP7D2Q96T17 732 aa17.46■□□□□ 0.39
SRP54-202ENST00000546080 IFT57Q9NWB7 429 aa17.46■□□□□ 0.39
SRP54-202ENST00000546080 PIK3C2BO00750 1634 aa17.46■□□□□ 0.39
SRP54-202ENST00000546080 MINK1Q8N4C8 1332 aaPredicted RBP17.45■□□□□ 0.38
SRP54-202ENST00000546080 ABCC3O15438 1527 aa17.45■□□□□ 0.38
SRP54-202ENST00000546080 TWISTNBQ3B726 338 aaPredicted RBP17.45■□□□□ 0.38
SRP54-202ENST00000546080 CASC1Q6TDU7 716 aa17.45■□□□□ 0.38
SRP54-202ENST00000546080 KIF20BQ96Q89 1820 aa17.45■□□□□ 0.38
SRP54-202ENST00000546080 XPCQ01831 940 aaPredicted RBP17.45■□□□□ 0.38
SRP54-202ENST00000546080 GPT2Q8TD30 523 aa17.45■□□□□ 0.38
SRP54-202ENST00000546080 DCTPP1Q9H773 170 aa17.45■□□□□ 0.38
SRP54-202ENST00000546080 MBIPQ9NS73 344 aa17.45■□□□□ 0.38
SRP54-202ENST00000546080 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.45■□□□□ 0.38
SRP54-202ENST00000546080 RBM27Q9P2N5 1060 aaKnown RBP17.45■□□□□ 0.38
SRP54-202ENST00000546080 FRMPD1Q5SYB0 1578 aa17.44■□□□□ 0.38
SRP54-202ENST00000546080 FAM13BQ9NYF5 915 aa17.44■□□□□ 0.38
SRP54-202ENST00000546080 ZKSCAN5Q9Y2L8 839 aa17.44■□□□□ 0.38
SRP54-202ENST00000546080 KIF24Q5T7B8 1368 aa17.44■□□□□ 0.38
SRP54-202ENST00000546080 KNDC1Q76NI1 1749 aa17.44■□□□□ 0.38
SRP54-202ENST00000546080 CSPP1Q1MSJ5 1256 aa17.43■□□□□ 0.38
SRP54-202ENST00000546080 ZGPATQ8N5A5 531 aaKnown RBP17.43■□□□□ 0.38
SRP54-202ENST00000546080 PHACTR3Q96KR7 559 aa17.43■□□□□ 0.38
SRP54-202ENST00000546080 CLTCQ00610 1675 aaKnown RBP17.43■□□□□ 0.38
SRP54-202ENST00000546080 UQCRHLA0A096LP55 91 aa17.43■□□□□ 0.38
SRP54-202ENST00000546080 UQCRHP07919 91 aa17.43■□□□□ 0.38
SRP54-202ENST00000546080 HMOX1P09601 288 aa17.43■□□□□ 0.38
SRP54-202ENST00000546080 LRSAM1Q6UWE0 723 aa17.43■□□□□ 0.38
SRP54-202ENST00000546080 MCM5P33992 734 aa17.42■□□□□ 0.38
SRP54-202ENST00000546080 PTPRMP28827 1452 aa17.42■□□□□ 0.38
SRP54-202ENST00000546080 SIGLEC1Q9BZZ2 1709 aa17.42■□□□□ 0.38
SRP54-202ENST00000546080 C16orf71Q8IYS4 520 aaPredicted RBP17.42■□□□□ 0.38
SRP54-202ENST00000546080 ZNF853P0CG23 659 aa17.41■□□□□ 0.38
SRP54-202ENST00000546080 PRAM1Q96QH2 718 aa17.41■□□□□ 0.38
SRP54-202ENST00000546080 SENP3Q9H4L4 574 aaPredicted RBP17.41■□□□□ 0.38
SRP54-202ENST00000546080 CCDC39Q9UFE4 941 aa17.41■□□□□ 0.38
SRP54-202ENST00000546080 SYCE3A1L190 88 aa17.4■□□□□ 0.38
SRP54-202ENST00000546080 SDSP20132 328 aa17.4■□□□□ 0.38
SRP54-202ENST00000546080 TMEM63CQ9P1W3 806 aa17.4■□□□□ 0.38
SRP54-202ENST00000546080 POLKQ9UBT6 870 aa17.4■□□□□ 0.38
SRP54-202ENST00000546080 ZDHHC9Q9Y397 364 aa17.4■□□□□ 0.38
SRP54-202ENST00000546080 YEATS2Q9ULM3 1422 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms