RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 ZNF692Q9BU19 519 aaPredicted RBP15.87■□□□□ 0.13
RNF4-222ENST00000541204 NOB1Q9ULX3 412 aaKnown RBP15.87■□□□□ 0.13
RNF4-222ENST00000541204 PTPRUQ92729 1446 aa15.86■□□□□ 0.13
RNF4-222ENST00000541204 TBC1D32Q96NH3 1257 aa15.86■□□□□ 0.13
RNF4-222ENST00000541204 FAM83GA6ND36 823 aa15.86■□□□□ 0.13
RNF4-222ENST00000541204 TRIM27P14373 513 aa15.86■□□□□ 0.13
RNF4-222ENST00000541204 NCBP3Q53F19 620 aaKnown RBP15.86■□□□□ 0.13
RNF4-222ENST00000541204 TTC21BQ7Z4L5 1316 aa15.85■□□□□ 0.13
RNF4-222ENST00000541204 MAP2P11137 1827 aaKnown RBP15.85■□□□□ 0.13
RNF4-222ENST00000541204 NFE2L2Q16236 605 aa15.85■□□□□ 0.13
RNF4-222ENST00000541204 ITPRIPQ8IWB1 547 aa15.85■□□□□ 0.13
RNF4-222ENST00000541204 CDC42BPGQ6DT37 1551 aa15.85■□□□□ 0.13
RNF4-222ENST00000541204 DCTN1Q14203 1278 aa15.85■□□□□ 0.13
RNF4-222ENST00000541204 AEBP1Q8IUX7 1158 aa15.85■□□□□ 0.13
RNF4-222ENST00000541204 RBM33Q96EV2 1170 aaKnown RBP15.83■□□□□ 0.13
RNF4-222ENST00000541204 TBC1D2Q9BYX2 928 aa15.83■□□□□ 0.13
RNF4-222ENST00000541204 ANTXR1Q9H6X2 564 aa15.83■□□□□ 0.13
RNF4-222ENST00000541204 THEMISQ8N1K5 641 aaPredicted RBP15.83■□□□□ 0.12
RNF4-222ENST00000541204 IL16Q14005 1332 aa15.83■□□□□ 0.12
RNF4-222ENST00000541204 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.83■□□□□ 0.12
RNF4-222ENST00000541204 HSP90AB2PQ58FF8 381 aa15.82■□□□□ 0.12
RNF4-222ENST00000541204 ATF7IPQ6VMQ6 1270 aa15.82■□□□□ 0.12
RNF4-222ENST00000541204 TSPYL6Q8N831 410 aa15.82■□□□□ 0.12
RNF4-222ENST00000541204 NGDNQ8NEJ9 315 aaKnown RBP15.82■□□□□ 0.12
RNF4-222ENST00000541204 SULT6B1Q6IMI4 303 aa15.81■□□□□ 0.12
RNF4-222ENST00000541204 CT47B1P0C2W7 299 aaPredicted RBP15.81■□□□□ 0.12
RNF4-222ENST00000541204 EIF4A2Q14240 407 aaKnown RBP15.81■□□□□ 0.12
RNF4-222ENST00000541204 NUTM2GQ5VZR2 741 aa15.81■□□□□ 0.12
RNF4-222ENST00000541204 AATKQ6ZMQ8 1374 aa15.81■□□□□ 0.12
RNF4-222ENST00000541204 KNDC1Q76NI1 1749 aa15.8■□□□□ 0.12
RNF4-222ENST00000541204 TMEM57Q8N5G2 664 aa15.8■□□□□ 0.12
RNF4-222ENST00000541204 SPRYD3Q8NCJ5 442 aa15.8■□□□□ 0.12
RNF4-222ENST00000541204 PLEKHG3A1L390 1219 aa15.8■□□□□ 0.12
RNF4-222ENST00000541204 CDK12Q9NYV4 1490 aaPredicted RBP15.8■□□□□ 0.12
RNF4-222ENST00000541204 KCNA6P17658 529 aa15.79■□□□□ 0.12
RNF4-222ENST00000541204 MBIPQ9NS73 344 aa15.79■□□□□ 0.12
RNF4-222ENST00000541204 TBX22Q9Y458 520 aa15.79■□□□□ 0.12
RNF4-222ENST00000541204 C3P01024 1663 aa15.79■□□□□ 0.12
RNF4-222ENST00000541204 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.79■□□□□ 0.12
RNF4-222ENST00000541204 USP6P35125 1406 aa15.77■□□□□ 0.12
RNF4-222ENST00000541204 MFAP1P55081 439 aaKnown RBP15.77■□□□□ 0.12
RNF4-222ENST00000541204 DDX19BQ9UMR2 479 aa15.77■□□□□ 0.11
RNF4-222ENST00000541204 MON2Q7Z3U7 1717 aa15.77■□□□□ 0.11
RNF4-222ENST00000541204 ITSN1Q15811 1721 aa15.76■□□□□ 0.11
RNF4-222ENST00000541204 GNAI1P63096 354 aa15.76■□□□□ 0.11
RNF4-222ENST00000541204 HDAC1Q13547 482 aaPredicted RBP15.76■□□□□ 0.11
RNF4-222ENST00000541204 C22orf23Q9BZE7 217 aa15.76■□□□□ 0.11
RNF4-222ENST00000541204 VAMP4O75379 141 aa15.75■□□□□ 0.11
RNF4-222ENST00000541204 MCM10Q7L590 875 aa15.75■□□□□ 0.11
RNF4-222ENST00000541204 C8orf58Q8NAV2 365 aa15.75■□□□□ 0.11
RNF4-222ENST00000541204 IPO8O15397 1037 aaKnown RBP15.75■□□□□ 0.11
RNF4-222ENST00000541204 C14orf37Q86TY3 774 aa15.75■□□□□ 0.11
RNF4-222ENST00000541204 KIF16BQ96L93 1317 aa15.75■□□□□ 0.11
RNF4-222ENST00000541204 CALD1Q05682 793 aaKnown RBP15.75■□□□□ 0.11
RNF4-222ENST00000541204 IFT57Q9NWB7 429 aa15.75■□□□□ 0.11
RNF4-222ENST00000541204 FER1L4A9Z1Z3 1794 aa15.74■□□□□ 0.11
RNF4-222ENST00000541204 PLEKHG5O94827 1062 aa15.74■□□□□ 0.11
RNF4-222ENST00000541204 KRT24Q2M2I5 525 aa15.74■□□□□ 0.11
RNF4-222ENST00000541204 TWISTNBQ3B726 338 aaPredicted RBP15.74■□□□□ 0.11
RNF4-222ENST00000541204 AKAP12Q02952 1782 aa15.74■□□□□ 0.11
RNF4-222ENST00000541204 MAP3K19Q56UN5 1328 aa15.74■□□□□ 0.11
RNF4-222ENST00000541204 ARHGAP23Q9P227 1491 aa15.73■□□□□ 0.11
RNF4-222ENST00000541204 NLRP6P59044 892 aa15.73■□□□□ 0.11
RNF4-222ENST00000541204 ALDH1L2Q3SY69 923 aa15.73■□□□□ 0.11
RNF4-222ENST00000541204 SLIT1O75093 1534 aa15.73■□□□□ 0.11
RNF4-222ENST00000541204 OVOS2A0A0J9YW53 1432 aa15.72■□□□□ 0.11
RNF4-222ENST00000541204 OVOS2Q6IE36 1432 aa15.72■□□□□ 0.11
RNF4-222ENST00000541204 AMPHP49418 695 aa15.72■□□□□ 0.11
RNF4-222ENST00000541204 LMOD3Q0VAK6 560 aa15.72■□□□□ 0.11
RNF4-222ENST00000541204 CFAP44Q96MT7 982 aa15.72■□□□□ 0.11
RNF4-222ENST00000541204 C1orf115Q9H7X2 142 aa15.72■□□□□ 0.11
RNF4-222ENST00000541204 SMC5Q8IY18 1101 aa15.72■□□□□ 0.11
RNF4-222ENST00000541204 FOXO3O43524 673 aa15.71■□□□□ 0.11
RNF4-222ENST00000541204 ZNF853P0CG23 659 aa15.71■□□□□ 0.11
RNF4-222ENST00000541204 ZBTB40Q9NUA8 1239 aa15.71■□□□□ 0.11
RNF4-222ENST00000541204 MIS18AQ9NYP9 233 aa15.71■□□□□ 0.11
RNF4-222ENST00000541204 MRPL50Q8N5N7 158 aaKnown RBP15.71■□□□□ 0.11
RNF4-222ENST00000541204 LTV1Q96GA3 475 aaPredicted RBP15.7■□□□□ 0.1
RNF4-222ENST00000541204 ARXQ96QS3 562 aa15.7■□□□□ 0.1
RNF4-222ENST00000541204 FAM43AQ8N2R8 423 aa15.69■□□□□ 0.1
RNF4-222ENST00000541204 MCM4P33991 863 aa15.69■□□□□ 0.1
RNF4-222ENST00000541204 DIP2AQ14689 1571 aa15.68■□□□□ 0.1
RNF4-222ENST00000541204 PTCH1Q13635 1447 aa15.68■□□□□ 0.1
RNF4-222ENST00000541204 ABTB2Q8N961 1025 aa15.68■□□□□ 0.1
RNF4-222ENST00000541204 LNPKQ9C0E8 428 aa15.68■□□□□ 0.1
RNF4-222ENST00000541204 TOPAZ1Q8N9V7 1692 aa15.68■□□□□ 0.1
RNF4-222ENST00000541204 TTC21AQ8NDW8 1320 aa15.67■□□□□ 0.1
RNF4-222ENST00000541204 ZBTB7CA1YPR0 619 aa15.67■□□□□ 0.1
RNF4-222ENST00000541204 L1TD1Q5T7N2 865 aaKnown RBP15.67■□□□□ 0.1
RNF4-222ENST00000541204 GZF1Q9H116 711 aaPredicted RBP15.67■□□□□ 0.1
RNF4-222ENST00000541204 CHMP5Q9NZZ3 219 aa15.67■□□□□ 0.1
RNF4-222ENST00000541204 SSH2Q76I76 1423 aa15.67■□□□□ 0.1
RNF4-222ENST00000541204 NRKQ7Z2Y5 1582 aa15.67■□□□□ 0.1
RNF4-222ENST00000541204 ANKLE2Q86XL3 938 aa15.67■□□□□ 0.1
RNF4-222ENST00000541204 RGPD8O14715 1765 aaPredicted RBP15.67■□□□□ 0.1
RNF4-222ENST00000541204 NUCB1Q02818 461 aa15.66■□□□□ 0.1
RNF4-222ENST00000541204 USP31Q70CQ4 1352 aa15.66■□□□□ 0.1
RNF4-222ENST00000541204 PEAK1Q9H792 1746 aa15.66■□□□□ 0.1
RNF4-222ENST00000541204 MTHFSDQ2M296 383 aaKnown RBP15.66■□□□□ 0.1
RNF4-222ENST00000541204 EYA1Q99502 592 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms